Job Description A0PJM3 Confidence 99.46% Date Tue Apr 3 14:51:25 BST 2012 Rank 10 Aligned Residues 158 % Identity 16% Template c1zbhA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease Resolution 3.00 Å

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		409	410	.	.	.	.	.	.	.	.	.	420	.	.						.	.	.	.	.	.	.	430			.	.	.		.	.	.	.	.			.	440	.	.	.	.	.	.	.			.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.									.	.				.						.	.										.	.
Query SS confidence																.	.	.	.	.									.	.				.						.	.										.	.
Query Sequence		I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	.	L	E	L	T	R	V	T	V	.	.	V	D	A	.	D	M	R	V	V	.	.	Y	D	T	F	V	K	P	D	N	.	.	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A
Query Conservation																.	.	.	.	.									.	.				.						.	.										.	.
Alig confidence																.	.	.	.	.									.	.				.						.	.										.	.																				.
Template Conservation																																																																								.
Template Sequence		I	C	I	I	D	F	E	A	T	C	E	E	G	N	P	P	E	F	V	H	E	I	I	E	F	P	V	V	L	L	N	T	H	T	L	E	I	E	D	T	F	Q	Q	Y	V	R	P	E	I	N	T	Q	L	S	D	F	C	I	S	L	T	G	I	T	Q	D	Q	V	D	R	.	A	D	T	F	P	Q	V	L	K
Template Known Secondary structure													T	T			T	T															T	T	T											B			S	S	S		S																		T	.	S	B
Template Predicted Secondary structure																																																																								.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.
		477	.	.	480	.	.							.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500									.	.	.	.	.					.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																			.	.	.	.	.	.	.	.						.	.	.	.																		.
Query SS confidence								.	.	.	.	.	.																			.	.	.	.	.	.	.	.						.	.	.	.																		.
Query Sequence		I	L	L	S	F	F	.	.	.	.	.	.	S	A	Q	T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	.	.	.	.	.	K	L	I	H	S	.	.	.	.	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	.	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I
Query Conservation								.	.	.	.	.	.																			.	.	.	.	.	.	.	.						.	.	.	.																		.
Alig confidence								.	.	.	.	.	.																			.	.	.	.	.	.	.	.						.	.	.	.																		.									.
Template Conservation																																																																											.
Template Sequence		K	V	I	D	L	M	K	L	K	E	L	G	T	K	Y	K	Y	S	L	L	T	D	G	S	W	D	M	S	K	F	L	N	I	Q	C	Q	L	S	R	L	K	Y	P	P	F	A	K	K	W	I	N	I	R	K	S	Y	G	N	F	Y	K	V	P	R	S	Q	T	K	L	T	I	M	L	.	E	K	L	G	M	D
Template Known Secondary structure										T	T	B	T	T	T	B							S	S	S					T									T	T	B				G	G	G	S														T			G	G	G		S						.			T	T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	D	S	Q	D	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V	R	Q	R	A	Q	I	Q	P
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		Y	D	G	R	P	.	.	N	C	G	L	D	D	S	K	N	I	A	R	I	A	V	R	M	L	Q	D	G	C	E	L	R	I
Template Known Secondary structure				S		T	.	.	T																			T	T
Template Predicted Secondary structure							.	.
Template SS confidence
		288	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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