Job Description A0PJM3 Confidence 91.04% Date Tue Apr 3 14:51:25 BST 2012 Rank 48 Aligned Residues 78 % Identity 15% Template c1tk0A_ PDB info PDB header:transferase/electron transport/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site Resolution 2.30 Å

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		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F	S	A	Q	T	I	L
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	V	S	D	I	E	A	N	A	L	L	E	S	V	T	K	F	H	C	G	V	I	Y	D	Y	S	T	A	E	Y	V	S	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	F	G	A	Y	L	D	A	L	E	A	E	V	A	R	G	G	L	I
Template Known Secondary structure										S	S		G	G	G												T	T	T	T							G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G														T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																									.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		489	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.													.	.	.	.	510
Predicted Secondary structure						.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	H	S	.	L	E	S	D	L	L	A	L	K	L	I	H	S	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	D	T
Query Conservation						.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	H	N	G	H	K	Y	D	V	P	A	L	T	K	L	A	K	L	Q	L	N	R	E	F	H	L	P	R	E	N	C	I	D	T
Template Known Secondary structure				S	S	T	T	T	T																					G	G	G
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions