Job Description A0PJM3 Confidence 93.07% Date Tue Apr 3 14:51:25 BST 2012 Rank 45 Aligned Residues 145 % Identity 18% Template c1s5jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus Resolution 2.40 Å

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		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.										.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	L	.	.	.	.	.	.	.	.	.	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																														.	.	.	.	.
Template Sequence		K	R	V	A	I	D	I	E	V	Y	T	P	V	K	G	R	I	P	D	S	Q	K	A	E	F	P	I	I	S	I	A	L	A	G	S	D	G	L	K	K	V	L	V	L	.	.	.	.	.	N	R	N	D	V	N	E	G	S	V	K	L	D	G	I	S	V	E	R	F	N	T	E	Y	E	L	L	G	R	F	F
Template Known Secondary structure													S	S	S	S					T	T	T			S										T	T	S								.	.	.	.	.		S	S										T	T							S	S
Template Predicted Secondary structure																																														.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500																									.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.								.	520	.	.	.	.	.	.
Predicted Secondary structure																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		L	S	F	F	S	A	Q	T	I	L	I	G	H	S	L	E	S	.	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	.	.	.	.	.	.	.	G	F	P	Y	K	R	S	L
Query Conservation																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence									.										.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		D	I	L	L	E	Y	P	.	I	V	L	T	F	N	G	D	D	F	D	L	P	Y	I	Y	F	R	A	L	K	L	G	Y	F	P	E	E	I	P	I	D	V	A	G	K	D	E	A	K	Y	L	A	G	L	H	I	D	L	Y	K	F	F	F	N	K	A	V	R	N	Y	A	F	E	G	K	Y	N	E	Y	N	L
Template Known Secondary structure					T	T		S	.					S	S	T	T	T	T											T	T	T			G	G	G		S					S	T	T					T	T	S										T	S							T	S	T	T			S	S		S
Template Predicted Secondary structure									.
Template SS confidence
		301	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.									.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	.	.	.	.	.	.	.	.	H	N	S	S	E	D	A	N	A	C	L	Q	L	V
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	V	A	K	A	L	L	G	T	S	K	V	D	T	L	I	S	F	L	D	V	E	K	L	I	E	Y	N	F	R	D	A	E	I	T	L	Q	L	T
Template Known Secondary structure															S	S		T	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions