Job Description A0PJM3 Confidence 94.34% Date Tue Apr 3 14:51:25 BST 2012 Rank 42 Aligned Residues 152 % Identity 19% Template c1q8iA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii; PDBTitle: crystal structure of escherichia coli dna polymerase ii Resolution 2.00 Å

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		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		F	K	K	E	L	S	R	D	A	Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	L	E	L	T	R	V	T	V	V	D	.	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q
Query Conservation																																						.
Alig confidence																						.	.	.														.																									.	.	.	.	.	.	.	.
Template Conservation																						.	.	.																																							.	.	.	.	.	.	.	.
Template Sequence		L	K	P	H	P	D	Y	R	P	P	L	K	W	V	S	I	D	I	E	T	.	.	.	T	R	H	G	E	L	Y	C	I	G	L	E	G	C	G	Q	R	I	V	Y	M	L	G	P	E	N	G	D	A	S	S	L	D	F	E	L	E	Y	.	.	.	.	.	.	.	.	V	A	S	R	P	Q	L	L	E	K	L
Template Known Secondary structure						T	T															.	.	.		T	T	S										T	T								S	S			S			T	T		S	S					.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																						.	.	.																																							.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.																																			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																					.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	L	L	S	F	F	S	A	Q	T	I	L	I	G	H	S	L	E	.	S	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	K	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F
Query Conservation																					.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.									.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		N	A	W	F	A	N	Y	D	P	D	.	V	I	I	G	W	N	V	V	Q	F	D	L	R	M	L	Q	K	H	A	E	R	Y	R	L	P	L	R	L	G	R	D	N	S	E	L	E	W	R	E	H	G	F	K	N	G	V	F	F	A	Q	A	K	G	R	L	I	I	D	G	I	E	A	L	K	S	A	F	W	N
Template Known Secondary structure											S	.					S	S	T	T	T	T												T	T						S	S	S	S										S	S	S							B	T	T	B												S
Template Predicted Secondary structure												.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.							.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	.	.	.	.	.	.	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	S	F	S	L	E	T	V	A	Q	E	L	L	M	D	E	I	D	R	R	F	A	E	D	K	P	A	L	A	T	Y	N	L	K	D	C	E	L	V	T	Q	I	F	H	K
Template Known Secondary structure			S										T	T			T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions