Job Description A0PJM3 Confidence 39.98% Date Tue Apr 3 14:51:25 BST 2012 Rank 72 Aligned Residues 127 % Identity 15% Template c1pqvS_ PDB info PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex Resolution 3.80 Å

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		204	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	R	G	Y	L	Q	L	F	T	E	E	C	.	L	K	F	C	A	S	K	Q	E	A	E	E	K	A	L	N	E	E	K	V	A	Y	D	C	S	P	.	.	.	N	K	N	R	Y	L	N	V	V	L	N	T	L	K	R	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	D	Q	V	L	K	A	L	Y	D	V	L	A	K	E	S	E	H	P	P	Q	S	I	L	H	T	A	K	A	I	E	S	E	M	N	K	V	N	N	C	D	T	N	E	A	A	Y	K	A	R	Y	R	I	I	Y	S	N	V	I	S	K	N	N	P	D	L	K	H	K	I	A	N	G	D	I	T	P	E	F
Template Known Secondary structure		S															S		S				S	T																		T	T	S	S	T	T													T	T	S	S						G	G	G	T	T			T					T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure		.	.																															.						.	.	.																										.	.	.
Query SS confidence		.	.																															.						.	.	.																										.	.	.
Query Sequence		.	.	G	L	T	P	S	S	M	P	G	L	S	R	A	A	L	Y	S	R	L	Q	E	F	L	L	T	Q	D	Q	L	K	.	E	N	G	Y	P	.	.	.	F	P	H	P	E	R	P	G	G	A	V	L	F	T	G	Q	G	K	G	P	G	D	S	S	C	.	.	.	R	V	C	C	R	C	G	T	E	Y	L
Query Conservation		.	.																															.						.	.	.																										.	.	.
Alig confidence		.	.																															.						.	.	.																										.	.	.
Template Conservation
Template Sequence		L	A	T	C	D	A	K	D	L	A	P	A	P	L	K	Q	K	I	E	E	I	A	K	Q	N	L	Y	N	A	Q	G	A	T	I	E	R	S	V	T	D	R	F	T	C	G	K	C	K	E	K	K	V	S	Y	Y	Q	L	Q	T	R	S	A	D	E	P	L	T	T	F	C	T	C	E	A	C	G	N	R	W	K
Template Known Secondary structure		T	T	S	S		S	T	T	T	S	S	T	T											T	T	T	T													T	T				S	S	S		S	S										S		S	S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions