Job Description P46109 Confidence 98.25% Date Sat Jun 16 10:40:36 BST 2012 Rank 301 Aligned Residues 128 % Identity 16% Template c3pvlA_ PDB info PDB header:motor protein/protein transport Chain: A: PDB Molecule:myosin viia isoform 1; PDBTitle: structure of myosin viia myth4-ferm-sh3 in complex with the cen1 of2 sans Resolution 2.80 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																					.	.	.	.					.	.	.	.
Query SS confidence																					.	.	.	.					.	.	.	.
Query Sequence		Q	R	H	G	M	F	L	V	R	D	S	S	T	C	P	G	D	Y	V	.	.	.	.	L	S	V	S	.	.	.	.	E	N	S	R	V	S	H	Y	I	I	N	S	L	P	N	R	R	F	K	I	G	D	Q	E	F	D	H	L	P	A	L	L	E	F	Y	K	I	H	Y	L	D	T	T	T	L	I	E	P	A
Query Conservation																					.	.	.	.					.	.	.	.
Alig confidence																					.	.	.	.					.	.	.	.																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		N	W	T	G	V	Y	F	V	D	E	Q	E	Q	V	L	L	E	L	S	F	P	E	I	M	A	V	S	S	S	R	G	T	K	M	M	A	P	S	F	T	L	A	T	I	K	G	D	E	Y	T	F	T	S	S	N	A	E	D	I	R	D	L	V	V	T	F	L	E	G	L	R	K	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T							T	T									G	G	G											S	S	S									T	T	S								T	T																		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		1494	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.										.
Query SS confidence																																																								.	.	.	.	.										.
Query Sequence		P	R	Y	P	S	P	P	M	G	S	V	S	A	P	N	L	P	T	A	E	D	N	L	E	Y	V	R	T	L	Y	D	F	P	G	N	D	A	E	D	L	P	F	K	K	G	E	I	L	V	I	I	E	K	P	.	.	.	.	.	E	E	Q	W	W	S	A	R	N	.	K	D	G	R	V	G	M	I	P	V	P
Query Conservation																																																								.	.	.	.	.										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																					.	.	.	.	.										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	K	Y	V	V	A	L	Q	D	N	.	.	P	N	S	G	F	L	S	F	A	K	G	D	L	I	I	L	D	H	D	T	G	E	Q	V	M	N	S	G	W	A	N	G	I	N	E	R	T	K	Q	R	G	D	F	P	T	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S			.	.					B					T	T						S	S									S	S							T	T	T								G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
																							1566	.	.	.	1570	.	.	.	.	.	.			.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	E	K	L	V	R	S	S	P	H	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	V	Y	V	M	P	T	V	T	L	P	P	R
Template Known Secondary structure		G							S	S
Template Predicted Secondary structure
Template SS confidence
		1628	.	1630	.	.	.	.	.	.	.	.	.	1640

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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