Phyre 2 alignment of Q5BN46 with d1pov1

Job Description Q5BN46
Confidence 1.42% Date Thu Apr 26 09:38:59 BST 2012

Rank 96 Aligned Residues 29

% Identity 28% Template d1pov1_

SCOP info Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Resolution 2.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	14	.	.	.	.	.	20	.	.	.	.	.	.												.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	P	K	A	T	A	P	P	E	R	T	S	D	.	.	.	.	.	.	.	.	.	.	.	Y	Y	R	V	S	A	D	L	P	G	R	F	N	N	P	G	W
Query Conservation														.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																															.
Template Sequence	V	P	P	G	A	P	V	P	E	K	W	D	D	Y	T	W	Q	T	S	S	N	P	S	I	F	Y	T	Y	G	T	.	A	P	A	R	I	S	V	P	Y	V
Template Known Secondary structure			T	T	S				S	S	T	T	S	G	G	G	G		S	S	S							T	T	S	.	S
Template Predicted Secondary structure																															.
Template SS confidence
	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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