Job Description Q5BN46 Confidence 2.09% Date Thu Apr 26 09:38:59 BST 2012 Rank 47 Aligned Residues 53 % Identity 26% Template c3vbfA_ PDB info PDB header:virus Chain: A: PDB Molecule:genome polyprotein, capsid protein vp1; PDBTitle: crystal structure of formaldehyde treated human enterovirus 71 (space2 group i23) Resolution 2.60 Å

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		12	.	.	.	.	.	.								.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.										.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	P	K	A	T	.	.	.	.	.	.	.	A	P	P	E	R	T	S	D	Y	Y	R	V	S	A	D	L	P	G	R	F	N	N	P	G	.	.	.	.	.	.	.	.	.	W	F	R	G	Y	R	T	Q	K	A	V	S	V	Y	R	T	S	N	Q	A	Y	G	S	R	A
Query Conservation									.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.															.										.	.	.	.	.	.	.	.	.													.	.
Template Conservation																														.																															.	.
Template Sequence		P	G	A	P	K	P	D	S	R	E	S	L	A	W	Q	T	A	T	N	P	S	V	F	V	K	L	S	D	.	P	P	A	Q	V	S	V	P	F	M	S	P	A	S	A	Y	Q	W	F	Y	D	G	Y	P	T	F	G	E	H	K	.	.	Q	E	K	D	L	E	Y	G	A	M	P
Template Known Secondary structure		T	T	S					S	T	T		G	G	G	G		S	S	S							T	T	S	.												S	S	S	S			S				S		S	S		S				.	.	G	G	G		T	T	T	T			G
Template Predicted Secondary structure																														.																															.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions