Email l.a.kelley@imperial.ac.uk Description A0PJX8 Date Thu Apr 26 09:45:40 BST 2012 Unique Job ID b4ebfd22d6e3dfe0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gb5B_ 33.7 36 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 2 c2jp3A_ 30.1 27 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 3 d1q7ha2 22.8 29 Fold:Cystatin-like Superfamily:Pre-PUA domain Family:Hypothetical protein Ta1423, N-terminal domain 4 c2jt1A_ 21.9 40 PDB header:transcription Chain: A: PDB Molecule:pefi protein; PDBTitle: solution nmr structure of pefi (plasmid-encoded fimbriae regulatory)2 protein from salmonella typhimurium. northeast structural genomics3 target str82 5 d1bsma1 21.4 50 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 6 d1ma1a1 14.4 50 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 7 c2wff4_ 12.7 44 PDB header:virus Chain: 4: PDB Molecule:p1; PDB Fragment:capsid protein vp4, residues 1-80 PDBTitle: equine rhinitis a virus 8 d1mnga1 12.1 50 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 9 d1nlna_ 12.0 33 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 10 d1uffa_ 12.0 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 11 c3htuE_ 11.7 56 PDB header:protein transport Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: crystal structure of the human vps25-vps20 subcomplex 12 c2q2fA_ 11.5 38 PDB header:membrane protein Chain: A: PDB Molecule:selenoprotein s; PDBTitle: structure of the human selenoprotein s (vcp-interacting membrane2 protein) 13 d1x6aa2 11.4 80 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 14 c3eyiB_ 11.4 32 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 15 c3ks7D_ 11.3 53 PDB header:hydrolase Chain: D: PDB Molecule:putative putative pngase f; PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution 16 c1junB_ 11.3 29 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 17 c3js4C_ 11.2 63 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum 18 d2axtm1 11.1 42 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein M, PsbM Family:PsbM-like 19 d1wc9a_ 10.9 16 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:TRAPP components 20 c1qqp4_ 10.6 44 PDB header:virus Chain: 4: PDB Molecule:protein (genome polyprotein); PDBTitle: foot-and-mouth disease virus/ oligosaccharide receptor complex. 21 c1bdeA_ not modelled 10.3 27 PDB header:aids Chain: A: PDB Molecule:vpr protein; PDBTitle: helical structure of polypeptides from the c-terminal half2 of hiv-1 vpr, nmr, 20 structures 22 c2e62A_ not modelled 9.9 86 PDB header:rna binding protein Chain: A: PDB Molecule:protein at5g25060; PDBTitle: solution structure of the cwf21 domain in protein aak25922 23 d1vava_ not modelled 9.6 38 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Alginate lyase 24 c3ceiA_ not modelled 9.6 63 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori 25 c1avmA_ not modelled 9.5 50 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide 26 c1byyA_ not modelled 9.5 63 PDB header:membrane protein Chain: A: PDB Molecule:protein (sodium channel alpha-subunit); PDBTitle: sodium channel iia inactivation gate 27 c2zrrA_ not modelled 9.4 28 PDB header:antimicrobial protein Chain: A: PDB Molecule:mundticin ks immunity protein; PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a 28 c3bj4B_ not modelled 9.4 50 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 29 c1ciiA_ not modelled 9.3 22 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 30 d1x68a2 not modelled 9.2 60 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 31 d1nkza_ not modelled 9.2 50 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 32 c3zquA_ not modelled 9.1 60 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 33 c2gpcB_ not modelled 9.1 75 PDB header:oxidoreductase Chain: B: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi 34 d1jgka_ not modelled 9.0 36 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 35 d2pw4a1 not modelled 8.9 50 Fold:Jann2411-like Superfamily:Jann2411-like Family:Jann2411-like 36 d1tg7a1 not modelled 8.9 33 Fold:Beta-galactosidase LacA, domain 3 Superfamily:Beta-galactosidase LacA, domain 3 Family:Beta-galactosidase LacA, domain 3 37 c1mngA_ not modelled 8.6 50 PDB header:oxidoreductase(superoxide acceptor) Chain: A: PDB Molecule:manganese superoxide dismutase; PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus 38 d1j7na3 not modelled 8.5 44 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins 39 c1x9vA_ not modelled 8.3 27 PDB header:viral protein Chain: A: PDB Molecule:vpr protein; PDBTitle: dimeric structure of the c-terminal domain of vpr 40 d1duga1 not modelled 8.3 30 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 41 c1bl1A_ not modelled 8.3 63 PDB header:hormone receptor Chain: A: PDB Molecule:parathyroid hormone receptor; PDBTitle: pth receptor n-terminus fragment, nmr, 1 structure 42 d2k4xa1 not modelled 8.2 40 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 43 c2kn0A_ not modelled 8.0 18 PDB header:apoptosis Chain: A: PDB Molecule:fn14; PDBTitle: solution nmr structure of xenopus fn14 44 d1ijda_ not modelled 7.8 44 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 45 c2kwzA_ not modelled 7.8 38 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [60-99] 46 c2jo1A_ not modelled 7.8 41 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 47 c1ma1E_ not modelled 7.7 50 PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum 48 c2ejbA_ not modelled 7.6 60 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 49 d2es9a1 not modelled 7.6 60 Fold:YoaC-like Superfamily:YoaC-like Family:YoaC-like 50 d1m72a_ not modelled 7.5 11 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 51 d1w6ka2 not modelled 7.4 50 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 52 c1y32A_ not modelled 7.4 50 PDB header:unknown function Chain: A: PDB Molecule:humanin; PDBTitle: nmr structure of humanin in 30% tfe solution 53 d2j3wb1 not modelled 7.4 21 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:TRAPP components 54 d2phcb1 not modelled 7.2 25 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 55 c2zp2B_ not modelled 7.2 17 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 56 c3no7A_ not modelled 7.2 47 PDB header:dna binding protein Chain: A: PDB Molecule:putative plasmid related protein; PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100 57 d1u2ca1 not modelled 7.2 55 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Dystroglycan, N-terminal domain 58 c2bn3A_ not modelled 7.1 63 PDB header:radiation damage Chain: A: PDB Molecule:insulin; PDBTitle: insulin before a high dose x-ray burn 59 c3prrL_ not modelled 7.1 53 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 60 d2axtl1 not modelled 7.1 53 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 61 c1s5lL_ not modelled 7.1 53 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 62 c3prqL_ not modelled 7.1 53 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 63 c2axtL_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 64 c1s5ll_ not modelled 7.1 53 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 65 c3arcL_ not modelled 7.1 53 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 66 c2axtl_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 67 c3bz2L_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 68 c3kziL_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 69 c3a0bL_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 70 c3bz1L_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 71 c3a0hl_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 72 c3a0hL_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 73 c3a0bl_ not modelled 7.1 53 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 74 d1whqa_ not modelled 7.1 19 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 75 d1lc0a2 not modelled 7.1 73 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Biliverdin reductase 76 d1xb4a2 not modelled 7.0 71 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 77 d2v4jb1 not modelled 7.0 50 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 78 d2axti1 not modelled 7.0 24 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 79 c1skhA_ not modelled 7.0 40 PDB header:unknown function Chain: A: PDB Molecule:major prion protein 2; PDBTitle: n-terminal (1-30) of bovine prion protein 80 c1mk2B_ not modelled 7.0 27 PDB header:transcription Chain: B: PDB Molecule:madh-interacting protein; PDBTitle: smad3 sbd complex 81 c2cfhA_ not modelled 6.9 13 PDB header:transport Chain: A: PDB Molecule:trafficking protein particle complex subunit 3; PDBTitle: structure of the bet3-tpc6b core of trapp 82 c3kwrA_ not modelled 6.9 56 PDB header:rna binding protein Chain: A: PDB Molecule:putative rna-binding protein; PDBTitle: crystal structure of putative rna-binding protein (np_785364.1) from2 lactobacillus plantarum at 1.45 a resolution 83 c2qqpD_ not modelled 6.8 50 PDB header:virus Chain: D: PDB Molecule:small capsid protein; PDBTitle: crystal structure of authentic providence virus 84 c2phcB_ not modelled 6.6 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 85 c3hieA_ not modelled 6.6 14 PDB header:exocytosis Chain: A: PDB Molecule:exocyst complex component sec3; PDBTitle: structure of the membrane-binding domain of the sec3 subunit2 of the exocyst complex 86 d1nuba3 not modelled 6.6 23 Fold:Kazal-type serine protease inhibitors Superfamily:Kazal-type serine protease inhibitors Family:Ovomucoid domain III-like 87 c2xb0X_ not modelled 6.5 13 PDB header:hydrolase Chain: X: PDB Molecule:chromo domain-containing protein 1; PDBTitle: dna-binding domain from saccharomyces cerevisiae chromatin-2 remodelling protein chd1 88 c3e5yB_ not modelled 6.5 29 PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei 89 d1j5wa_ not modelled 6.5 28 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 90 d2d4pa1 not modelled 6.5 35 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 91 d1xmka1 not modelled 6.5 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 92 c2becB_ not modelled 6.4 33 PDB header:metal binding protein/transport protein Chain: B: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: crystal structure of chp2 in complex with its binding2 region in nhe1 and insights into the mechanism of ph3 regulation 93 c1znmA_ not modelled 6.4 36 PDB header:zinc finger Chain: A: PDB Molecule:yy1; PDBTitle: a zinc finger with an artificial beta-turn, original2 sequence taken from the third zinc finger domain of the3 human transcriptional repressor protein yy1 (ying and yang4 1, a delta transcription factor), nmr, 34 structures 94 c2k1vA_ not modelled 6.4 60 PDB header:hormone Chain: A: PDB Molecule:insulin-like peptide insl5; PDBTitle: r3/i5 relaxin chimera 95 c2kbcA_ not modelled 6.4 60 PDB header:hormone Chain: A: PDB Molecule:insl5_a-chain; PDBTitle: solution structure of human insulin-like peptide 5 (insl5) 96 d1w2ya_ not modelled 6.3 25 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:Type II deoxyuridine triphosphatase 97 c1facA_ not modelled 6.3 45 PDB header:coagulation factor Chain: A: PDB Molecule:coagulation factor viii; PDBTitle: coagulation factor viii, nmr, 1 structure 98 c2lgbA_ not modelled 6.3 57 PDB header:hormone Chain: A: PDB Molecule:insulin a chain; PDBTitle: human insulin mutant a22gly-b31arg 99 d1ecib_ not modelled 6.3 86 Fold:Ectatomin subunits Superfamily:Ectatomin subunits Family:Ectatomin subunits