Job Description O43719 Confidence 99.64% Date Wed May 9 18:03:47 BST 2012 Rank 67 Aligned Residues 83 % Identity 20% Template d2j0sd1 SCOP info Ferredoxin-like RNA-binding domain, RBD Canonical RBD Resolution 2.21

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E
Query Conservation																																																			.
Alig confidence																																					.	.	.	.	.	.	.	.							.
Template Conservation																																					.	.	.	.	.	.	.	.
Template Sequence		Q	R	S	V	E	G	W	I	L	F	V	T	G	V	H	E	E	A	T	E	E	D	I	H	D	K	F	A	E	Y	G	E	I	K	N	.	.	.	.	.	.	.	.	I	H	L	N	L	D	R	R	T	G	Y	L	K	G	Y	T	L	V	E	Y	E	T	Y	K	E	A	Q	A	A	M	E	G	L	N	G	Q	D
Template Known Secondary structure				B	T	T	B										T	T												T	T	S					.	.	.	.	.	.	.	.							T	T	T	S	S										S	S												T	T		B
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	G	Y	K	L	H	V	E	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	G	Q	P	I	S	V	D	W	C	F
Template Known Secondary structure		S	S	S	S	B						S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions