Job Description O43719 Confidence 96.39% Date Wed May 9 18:03:47 BST 2012 Rank 223 Aligned Residues 79 % Identity 20% Template d1uw4a_ SCOP info Ferredoxin-like RNA-binding domain, RBD Smg-4/UPF3 Resolution 1.95

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.									.	.																										.
Query SS confidence																																													.									.	.																										.
Query Sequence		T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	.	.	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	.
Query Conservation																																													.									.	.																										.
Alig confidence																															.	.	.	.	.	.	.	.							.									.	.																										.
Template Conservation																															.	.	.	.	.	.	.	.
Template Sequence		S	K	V	V	I	R	R	L	P	P	T	L	T	K	E	Q	L	Q	E	H	L	Q	P	M	P	E	H	D	Y	.	.	.	.	.	.	.	.	F	E	F	F	S	N	D	T	S	L	Y	P	H	M	Y	A	R	A	Y	I	N	F	K	N	Q	E	D	I	I	L	F	R	D	R	F	D	G	Y	V	F	L	D	N
Template Known Secondary structure											T	T												S							.	.	.	.	.	.	.	.						S			S	S	T	T											S	S	S											T	T						T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.									80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
						209	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Y	K	L	H	V	E	V	A	K	F	Q
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		K	G	Q	E	Y	P	A	I	V	E	F	A	P	F	Q
Template Known Secondary structure		T												S	S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions