Job Description O43719 Confidence 99.73% Date Wed May 9 18:03:47 BST 2012 Rank 31 Aligned Residues 111 % Identity 20% Template d1u6fa1 SCOP info Ferredoxin-like RNA-binding domain, RBD Canonical RBD Resolution UNK

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		G	E	K	R	K	A	E	S	G	W	F	H	V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S
Query Conservation																																																															.
Alig confidence																																																	.	.	.	.	.	.	.	.							.
Template Conservation																																																	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	Q	Q	H	I	P	P	T	Q	M	N	P	E	P	D	V	L	R	N	L	M	V	N	Y	I	P	T	T	V	D	E	V	Q	L	R	Q	L	F	E	R	Y	G	P	I	E	S	.	.	.	.	.	.	.	.	V	K	I	V	C	D	R	E	T	R	Q	S	R	G	Y	G	F	V	K	F	Q	S	G	S	S
Template Known Secondary structure		S		T	T				S	S		S	S			T	T	T	T	S						S		S	T	T														S					.	.	.	.	.	.	.	.							T	T	T	T											S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.									.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	Q	A	I	A	G	L	N	G	F	N	I	L	N	K	R	L	K	V	A	L	A	A	S	G	H	Q	R	P	G	I	A	G	A	V	G	D	G	N
Template Known Secondary structure									T	T	T				S	S								S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions