Job Description O43719 Confidence 99.89% Date Wed May 9 18:03:47 BST 2012 Rank 9 Aligned Residues 174 % Identity 24% Template d1u1qa_ SCOP info Ferredoxin-like RNA-binding domain, RBD Canonical RBD Resolution 1.80

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I
Query Conservation																																																		.
Alig confidence																																				.	.	.	.	.	.	.	.							.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		E	P	E	Q	L	R	K	L	F	I	G	G	L	S	F	E	T	T	D	E	S	L	R	S	H	F	E	Q	W	G	T	L	T	D	.	.	.	.	.	.	.	.	C	V	V	M	R	D	P	N	T	K	R	S	R	G	F	G	F	V	T	Y	A	T	V	E	E	V	D	A	A	M	N	A	R	P	H	K	V	D
Template Known Secondary structure													S			T	T											G	G	G	S					.	.	.	.	.	.	.	.							T	T	T												S	S										T		S				T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	V	V	E	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	V	S	R	E	D	S	Q	R	P	G	A	H	L	T	V	K	K	I	F	V	G	G	I	K	E	D	T	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	G	G	G	S	T	T	T	T				S									T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.																																		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		I	R	E	D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	.	.	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	R	Q	I	T	A	Q	A	W	D	G	T	T	D	Y	Q
Query Conservation																							.	.	.	.
Alig confidence		.																					.	.	.	.																								.
Template Conservation		.																																																.
Template Sequence		.	E	H	H	L	R	D	Y	F	E	Q	Y	G	K	I	E	V	I	E	I	M	T	D	R	G	S	G	K	K	R	G	F	A	F	V	T	F	D	D	H	D	S	V	D	K	I	V	I	.	Q	K	Y	H	T	V	N	G	H	N	C	E	V	R	K	A	L	S	K	Q	E	M	A
Template Known Secondary structure		.									G	G	G	S											T	T	T												S										T	.	S	S					T	T
Template Predicted Secondary structure		.																																																.
Template SS confidence
			118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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