Job Description O43719 Confidence 23.52% Date Wed May 9 18:03:47 BST 2012 Rank 248 Aligned Residues 173 % Identity 16% Template c3tsuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate Resolution 1.92 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L	H
Query Conservation
Alig confidence																			.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation																			.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Sequence		T	S	G	N	L	S	G	K	P	P	A	I	S	N	E	Q	A	.	.	.	L	E	D	L	Q	G	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	F	L	I	H	N	R	D	I	.	.	.	.	.	V	Q	R	M	D	D	S	V	V	R	E	S	G	E	M
Template Known Secondary structure				S	S	S	T	T	S					S					.	.	.				T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S	S			.	.	.	.	.		S									T	T	S
Template Predicted Secondary structure																			.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.																							.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E	D	L	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Sequence		L	R	R	S	R	.	.	.	.	.	.	.	.	.	.	G	Y	V	P	D	A	L	A	L	P	P	G	F	K	N	V	P	P	V	L	C	L	G	A	D	L	K	N	T	F	C	L	V	R	G	E	Q	V	V	L	S	Q	H	L	G	D	L	S	D	D	G	I	.	.	.	.	Q	T	Q	W	R	E	A	L	R
Template Known Secondary structure						T	.	.	.	.	.	.	.	.	.	.	T	T	T	T							T	T			S										S	S	S	B								T									B		T	T	S	S	S		.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template SS confidence
		371	.	.	.	.											.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.					.	.	430	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.											.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	D	R	H	P	D	.	.	.	.	.	.	.	.	.	.	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	R	Q	I	T	A	Q	A	W	D	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	Q	N	I	Y	N	F	T	P	Q	Y	V	V	H	D	A	H	P	G	Y	V	S	C	Q	W	A	S	E	M	N	L	P	T	Q	T	V	L	H	H	H	A	H	A	A	A	C	L	A	E	H	Q	W	P	L	D	G	G	D	V	I	A	L	T	L	D	G
Template Known Secondary structure								T				S						S		T	T									T	S		S																			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions