Job Description O43719 Confidence 99.94% Date Wed May 9 18:03:47 BST 2012 Rank 2 Aligned Residues 192 % Identity 15% Template c3s01A_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution Resolution 2.15 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		R	N	T	N	V	Y	V	S	G	L	P	P	D	I	.	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y
Query Conservation																.
Alig confidence																.																		.	.	.	.	.	.	.	.							.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		D	S	P	V	L	X	V	Y	G	L	D	Q	S	K	X	N	C	D	R	V	F	N	V	F	C	L	Y	G	N	V	E	K	.	.	.	.	.	.	.	.	V	K	F	X	K	S	.	.	.	.	K	P	G	A	A	X	V	E	X	A	D	G	Y	A	V	D	R	A	I	T	H	L	N	N	N	F	X	F	G	Q
Template Known Secondary structure		S	S	S						S			T	T	T											T	T	T	S					.	.	.	.	.	.	.	.					T	T	.	.	.	.	S	T	T							S	S												T	T				T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.									.	410	.	.	.	.					.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E
Query Conservation
Alig confidence																																													.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	X	N	V	C	V	S	K	Q	P	A	I	X	P	G	Q	S	Y	G	L	E	D	G	S	C	S	Y	K	D	F	S	E	S	R	N	N	R	F	S	T	P	E	Q	.	A	A	K	N	R	I	Q	H	P	S	N	V	L	H	F	F	N	A	P	L	E	V	T	.	.	.	.	.	.	.	.	.	.	.	E	E
Template Known Secondary structure									S	S	S	S					S			B		T	T	S		B	S					T	T		T	T		S		S	S				.			T	S							S									T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510												.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.							.	.	.	.	.
Predicted Secondary structure																				.																																			.	.	.	.	.	.
Query SS confidence																				.																																			.	.	.	.	.	.
Query Sequence		D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	R	Q	.	.	.	.	.	.	I	T	A	Q	A
Query Conservation																				.																																			.	.	.	.	.	.
Alig confidence																				.																																			.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	F	E	I	C	D	E	L	G	V	K	R	P	T	S	V	K	V	F	S	G	R	S	S	S	G	L	L	E	W	D	S	K	S	D	A	L	E	T	L	G	F	L	N	H	Y	Q	X	K	N	P	N	G	P	Y	P	Y	T	L	K	L	C	F
Template Known Secondary structure											T					S																	S	S												T	T						S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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