Job Description O43719 Confidence 99.62% Date Wed May 9 18:03:47 BST 2012 Rank 96 Aligned Residues 78 % Identity 22% Template c3q2tC_ PDB info PDB header:rna binding protein/rna Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex Resolution 3.06 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L	H
Query Conservation																																												.
Alig confidence																																.	.	.	.	.	.							.
Template Conservation																																.	.	.	.	.	.
Template Sequence		A	L	Y	I	G	N	L	T	W	W	T	T	D	E	D	L	T	E	A	V	H	S	L	G	V	N	D	I	L	E	.	.	.	.	.	.	I	K	F	F	E	N	R	A	N	G	Q	S	K	G	F	A	L	V	G	V	G	S	E	A	S	S	K	K	L	M	D	L	L	P	K	R	E	L	H	G	Q	N	P	V
Template Known Secondary structure							S			T	T											G	G	G	T							.	.	.	.	.	.							T	T	T												S	S	S	S									S	T	T	S		B	T	T	B
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		213	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	P	V	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions