Job Description O43719 Confidence 99.72% Date Wed May 9 18:03:47 BST 2012 Rank 36 Aligned Residues 109 % Identity 18% Template c3pgwS_ PDB info PDB header:splicing/dna/rna Chain: S: PDB Molecule:u1-70k; PDBTitle: crystal structure of human u1 snrnp Resolution 4.40 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		P	Q	E	K	A	P	E	P	T	D	A	R	K	K	G	E	K	R	K	A	E	S	G	W	F	H	V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N
Query Conservation																																																																													.
Alig confidence																																																															.	.	.	.	.	.	.	.							.
Template Conservation																																																															.	.	.	.	.	.	.	.
Template Sequence		R	R	E	K	I	E	R	R	Q	Q	E	V	E	T	E	L	K	M	W	D	P	H	N	D	P	N	A	Q	G	D	A	F	K	T	L	F	V	A	R	V	N	Y	D	T	T	E	S	K	L	R	R	E	F	E	V	Y	G	P	I	K	R	.	.	.	.	.	.	.	.	I	H	M	V	Y	S	K	R	S	G	K
Template Known Secondary structure																					S	G	G	G	T	T	S	S	S			S	S										S	S														S		B			.	.	.	.	.	.	.	.							S	S		S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.									.	.	.	.	.	.	.	.	140	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L	H	V	E	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	G	Y	A	F	I	E	Y	E	H	E	R	D	M	H	S	A	Y	K	H	A	D	G	K	K	I	D	G	R	R	V	L	V	D	V	E	R
Template Known Secondary structure										B	S	S												S	S				T	T									S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions