Job Description O43719 Confidence 99.56% Date Wed May 9 18:03:47 BST 2012 Rank 138 Aligned Residues 81 % Identity 21% Template c3pgwP_ PDB info PDB header:splicing/dna/rna Chain: P: PDB Molecule:u1-a; PDBTitle: crystal structure of human u1 snrnp Resolution 4.40 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	.	.	.	.	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	T	R	P	N	H	T	I	Y	I	N	N	L	N	E	K	I	K	K	D	E	L	K	K	S	L	Y	A	I	F	S	Q	F	G	Q	I	.	.	.	.	.	.	.	.	.	.	L	D	I	L	V	S	R	S	L	K	M	R	G	Q	A	F	V	I	F	K	E	V	S	S	A	T	N	A	L	R	S	M	Q
Template Known Secondary structure		S	T	T	S			S						S			T	T	S														T	T	T	S		B	.	.	.	.	.	.	.	.	.	.	S			B				S	T	T	T	S	S						B	S	S										T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40											.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	E	I	R	G	Y	K	L	H	V	E	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	P	F	Y	D	K	P	M	R	I	Q	Y	A	K
Template Known Secondary structure		T				T	T									S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions