Job Description O43719 Confidence 99.46% Date Wed May 9 18:03:47 BST 2012 Rank 193 Aligned Residues 78 % Identity 19% Template c3ns5B_ PDB info PDB header:translation Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: crystal structure of the rna recognition motif of yeast eif3b residues2 76-161 Resolution 2.60 Å

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		132	.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																																			.
Query SS confidence												.	.	.	.	.	.																																			.
Query Sequence		N	T	N	V	Y	V	S	G	L	P	.	.	.	.	.	.	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D
Query Conservation												.	.	.	.	.	.																																			.
Alig confidence												.	.	.	.	.	.																					.	.	.	.	.	.	.	.							.
Template Conservation																																						.	.	.	.	.	.	.	.
Template Sequence		D	Q	Y	I	V	V	N	G	A	P	V	I	P	S	A	K	V	P	V	L	K	K	A	L	T	S	L	F	S	K	A	G	K	V	V	N	.	.	.	.	.	.	.	.	M	E	F	P	I	D	E	A	T	G	K	T	K	G	F	L	F	V	E	C	G	S	M	N	D	A	K	K	I	I	K	S	F	H	G	K
Template Known Secondary structure		S							S					B	G	G	G													T	T	T	S					.	.	.	.	.	.	.	.							T	T	T	T				S							S	S												T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.									.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		205	.	.	.	.		210	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		E	I	R	G	Y	.	K	L	H	V	E	V	A	K
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		R	L	D	L	K	H	R	L	F	L	Y	T	M	K
Template Known Secondary structure		B	S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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