Job Description O43719 Confidence 99.62% Date Wed May 9 18:03:47 BST 2012 Rank 95 Aligned Residues 77 % Identity 17% Template c3nnhA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:cugbp elav-like family member 1; PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna Resolution 2.75 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.																													.	.
Query SS confidence																																																	.	.	.																													.	.
Query Sequence		N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	.	.	.	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	.	.
Query Conservation																																																	.	.	.																													.	.
Alig confidence																																.	.	.	.	.	.	.	.										.	.	.																													.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		A	I	K	M	F	V	G	Q	V	P	R	T	W	S	E	K	D	L	R	E	L	F	E	Q	Y	G	A	V	Y	E	.	.	.	.	.	.	.	.	I	N	V	L	R	D	R	S	Q	N	P	P	Q	S	K	G	C	C	F	V	T	F	Y	T	R	K	A	A	L	E	A	Q	N	A	L	H	N	M	K	V	L	P
Template Known Secondary structure												T	T											T	T	T	S					.	.	.	.	.	.	.	.							T	T	S	S	S												S													T	T	T				T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
			207	.	.	210	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	R	G	Y	K	L	H	V	E	V	A
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		G	M	H	H	P	I	Q	M	K	P	A
Template Known Secondary structure		T		S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions