Job Description O43719 Confidence 99.62% Date Wed May 9 18:03:47 BST 2012 Rank 97 Aligned Residues 76 % Identity 16% Template c3md1B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1) Resolution 1.60 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L
Query Conservation																																													.
Alig confidence																															.	.	.	.	.	.	.	.							.
Template Conservation																															.	.	.	.	.	.	.	.
Template Sequence		F	N	L	F	V	G	D	L	N	V	N	V	D	D	E	T	L	R	N	A	F	K	D	F	P	S	Y	L	S	.	.	.	.	.	.	.	.	G	H	V	M	W	D	M	Q	T	G	S	S	R	G	Y	G	F	V	S	F	T	S	Q	D	D	A	Q	N	A	M	D	S	M	Q	G	Q	D	L	N	G	R	P	L
Template Known Secondary structure								S			T	T											T	T	S	T	T				.	.	.	.	.	.	.	.							T	T	T												S													T	T				T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		212	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	E	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	N	W	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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