Job Description O43719 Confidence 99.68% Date Wed May 9 18:03:47 BST 2012 Rank 41 Aligned Residues 87 % Identity 16% Template c3egnA_ PDB info PDB header:splicing Chain: A: PDB Molecule:rna-binding protein 40; PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein Resolution 2.50 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		E	P	N	C	R	I	Y	V	K	N	L	A	K	H	V	Q	E	K	D	L	K	Y	I	F	G	R	Y	V	D	F	S	S	.	.	E	T	Q	R	I	M	F	D	I	R	L	M	K	E	G	R	M	K	G	Q	A	F	I	G	L	P	N	E	K	A	A	A	K	A	L	K	E	A	N	G	Y	V	L	F	G	K
Template Known Secondary structure		S			S									T	T											G	G	G			T	T		.	.															T	T	T									S	S												T	T	B			T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	H	V	E	V	A	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	V	V	Q	F	A	R	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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