Job Description O43719 Confidence 99.60% Date Wed May 9 18:03:47 BST 2012 Rank 117 Aligned Residues 77 % Identity 27% Template c3b4mD_ PDB info PDB header:rna binding protein Chain: D: PDB Molecule:polyadenylate-binding protein 2; PDBTitle: crystal structure of human pabpn1 rrm Resolution 2.82 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G
Query Conservation																																																.
Alig confidence																																		.	.	.	.	.	.	.	.							.																									.
Template Conservation																																		.	.	.	.	.	.	.	.																																.
Template Sequence		A	D	A	R	S	I	Y	V	G	N	V	D	Y	G	A	T	A	E	E	L	E	A	H	F	H	G	C	G	S	V	N	R	.	.	.	.	.	.	.	.	V	T	I	L	C	D	K	F	S	G	H	P	K	G	F	A	Y	I	E	F	S	D	K	E	S	V	R	T	S	L	A	.	L	D	E	S	L	F	R	G
Template Known Secondary structure				S	S						S			T	T											G	G	G						.	.	.	.	.	.	.	.						S		S	S	S	S										S	S	S							G	G	.	G	T	T				T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.																																.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	H	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	I	K	V	I	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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