Job Description O43719 Confidence 99.53% Date Wed May 9 18:03:47 BST 2012 Rank 168 Aligned Residues 70 % Identity 24% Template c2xnqA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3; PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm Resolution 1.30 Å

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		132	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		N	T	N	V	Y	V	S	G	L	P	P	.	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K
Query Conservation													.
Alig confidence													.																				.	.	.	.	.	.	.	.				.	.	.	.	.	.	.																												.
Template Conservation																																	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.																												.
Template Sequence		K	S	R	L	F	I	G	N	L	P	L	K	N	V	S	K	E	D	L	F	R	I	F	S	P	Y	G	H	I	M	Q	.	.	.	.	.	.	.	.	I	N	I	.	.	.	.	.	.	.	K	N	A	F	G	F	I	Q	F	D	N	P	Q	S	V	R	D	A	I	E	E	S	Q	E	M	N	F	.	G	K	K
Template Known Secondary structure		T							S			S	S												G	G	G	S					.	.	.	.	.	.	.	.				.	.	.	.	.	.	.		S	S							S	S											T	T	S			T	.	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.																												.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.									360	.	.								.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.
		211	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	V	E	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	L	E	V	S	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions