Job Description O43719 Confidence 99.45% Date Wed May 9 18:03:47 BST 2012 Rank 197 Aligned Residues 75 % Identity 19% Template c2vopA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:lupus la protein; PDBTitle: crystal structure of n-terminal domains of human la protein2 complexed with rna oligomer auuuu Resolution 2.8 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.																															.
Template Conservation																																.	.	.	.	.	.	.	.																															.
Template Sequence		N	R	S	V	Y	I	K	G	F	P	T	D	A	T	L	D	D	I	K	E	W	L	E	D	K	G	Q	V	L	N	.	.	.	.	.	.	.	.	I	Q	M	R	R	T	L	H	K	A	F	K	G	S	I	F	V	V	F	D	S	I	E	S	A	K	K	F	V	E	.	T	P	G	Q	K	Y	K	E	T	D	L
Template Known Secondary structure		T	T									T	T											T	T	S						.	.	.	.	.	.	.	.							S	S	S											S	S									T	.		S				S	T	T	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.																															.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.									140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180
		212	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	L	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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