Job Description O43719 Confidence 99.85% Date Wed May 9 18:03:47 BST 2012 Rank 12 Aligned Residues 167 % Identity 16% Template c2qfjA_ PDB info PDB header:transcription repressor/dna Chain: A: PDB Molecule:fbp-interacting repressor; PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse Resolution 2.10 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.							.
Template Conservation																																.	.	.	.	.	.	.	.							.
Template Sequence		M	S	R	V	Y	V	G	S	I	Y	Y	E	L	G	E	D	T	I	R	Q	A	F	A	P	F	G	P	I	K	S	.	.	.	.	.	.	.	.	I	D	M	S	W	D	.	V	T	K	H	K	G	F	A	F	V	E	Y	E	V	P	E	A	A	Q	L	A	L	E	Q	M	N	S	V	M	L	G	R	N	I	K
Template Known Secondary structure			T									T	T											G	G	G	S					.	.	.	.	.	.	.	.							.						S							S	S												S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.							.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140									.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E	D	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	R	P	S	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	A	Q	P	I	I	D	Q	L	A	E	E	A	R	A	F	N	R	I	Y	V	A	S	V	H	Q	D	L	S	.	.	.	.	.	.	.	.	.	.	.	D	D	D	I
Template Known Secondary structure						S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G												T	T	S										T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.																													.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.												.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	.	.	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	R	Q	I	T	A	Q	A
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.
Template Conservation
Template Sequence		K	S	V	F	E	A	F	G	K	I	K	S	A	T	L	A	R	D	P	T	T	G	K	H	K	G	Y	G	F	I	E	Y	E	K	A	Q	S	S	Q	D	A	V	S	S	M	N	L	F	D	L	G	G	Q	Y	L	R	V	G	K
Template Known Secondary structure						T	T	S	S											T	T	T												S	S												T	T		B		S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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