Job Description O43719 Confidence 99.63% Date Wed May 9 18:03:47 BST 2012 Rank 82 Aligned Residues 86 % Identity 21% Template c2kxnB_ PDB info PDB header:rna binding protein/rna Chain: B: PDB Molecule:transformer-2 protein homolog beta; PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna Resolution UNK

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I
Query Conservation																																																		.
Alig confidence																																				.	.	.	.	.	.	.	.							.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		N	P	D	P	N	C	C	L	G	V	F	G	L	S	L	Y	T	T	E	R	D	L	R	E	V	F	S	K	Y	G	P	I	A	D	.	.	.	.	.	.	.	.	V	S	I	V	Y	D	Q	Q	S	R	R	S	R	G	F	A	F	V	Y	F	E	N	V	D	D	A	K	E	A	K	E	R	A	N	G	M	E	L
Template Known Secondary structure						S	S		B				T		T	T	S											T	T	T	S					.	.	.	.	.	.	.	.							S	S	S	S											S													T	T			S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	R	R	I	R	V	D	F	S	I	T	K	R	P
Template Known Secondary structure		S	S	S					S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions