Job Description O43719 Confidence 99.56% Date Wed May 9 18:03:47 BST 2012 Rank 139 Aligned Residues 87 % Identity 24% Template c2jx2A_ PDB info PDB header:transcription Chain: A: PDB Molecule:negative elongation factor e; PDBTitle: solution conformation of rna-bound nelf-e rrm Resolution UNK

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R
Query Conservation
Alig confidence															.	.																				.	.	.	.	.	.	.	.				.	.	.	.	.
Template Conservation															.	.																				.	.	.	.	.	.	.	.				.	.	.	.	.
Template Sequence		A	P	R	K	G	N	T	L	Y	V	Y	G	E	.	.	D	M	T	P	T	L	L	R	G	A	F	S	P	F	G	N	I	I	D	.	.	.	.	.	.	.	.	L	S	M	.	.	.	.	.	D	P	P	R	N	C	A	F	V	T	Y	E	K	M	E	S	A	D	Q	A	V	A	E	L	N	G	T	Q	V	E
Template Known Secondary structure						B								S	.	.	S											T	T	T						.	.	.	.	.	.	.	.				.	.	.	.	.		T	T	T	T							S	S												T	T				S
Template Predicted Secondary structure															.	.																				.	.	.	.	.	.	.	.				.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	Q	L	K	V	N	I	A	R	K	Q	P	M	L	D	A	A	T	G	K	S
Template Known Secondary structure		S												T	T	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions