Job Description O43719 Confidence 99.96% Date Wed May 9 18:03:47 BST 2012 Rank 1 Aligned Residues 197 % Identity 17% Template c2ghpC_ PDB info PDB header:rna binding protein Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24; PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24 Resolution 2.70 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L	H
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.							.
Template Conservation																															.	.	.	.	.	.	.	.							.
Template Sequence		T	T	V	L	V	K	N	L	P	K	S	Y	N	Q	N	K	V	Y	K	Y	F	K	H	C	G	P	I	I	H	.	.	.	.	.	.	.	.	V	D	V	A	D	S	.	L	K	K	N	F	R	F	A	R	I	E	F	A	R	Y	D	G	A	L	A	A	I	T	K	T	H	K	V	V	G	Q	N	E	I	I	V
Template Known Secondary structure											T	T											G	G	G	S					.	.	.	.	.	.	.	.							.	T	T	S	S	S								S	S									T	T	T	T				T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.							.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.									70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.																																	.	.	.	.	260
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	S	R	M
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	H	L	T	E	C	T	L	W	X	T	N	F	P	P	S	Y	T	Q	R	N	I	R	D	L	L	Q	D	I	N	V	V	A	L	S	I	R	L	P	R	R	F	A	Y	I	D	V	T	S	K	E	D	A	R	Y	C	V	E	K	L	N	G	L	K	I	E	G	Y	T	L	V	T	K	V	S	N	P	L	T	L
Template Known Secondary structure						S										T	T													T	T																		S	S												T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E	D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G
Query Conservation																																																	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																					.	.																								.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.																																														.
Template Sequence		E	G	R	E	I	X	I	R	N	L	S	T	E	L	L	D	.	.	.	.	.	.	.	.	.	.	.	E	N	L	L	R	E	S	F	E	G	F	G	S	I	E	K	I	N	I	P	A	G	Q	K	F	N	N	C	C	A	F	X	V	F	E	N	K	D	S	A	E	R	A	L	Q	.	X	N	R	S	L	L	G
Template Known Secondary structure		T	T	T									T	T	T			.	.	.	.	.	.	.	.	.	.	.									G	G	G	S									S														S	S								G	G	.	G	T	T				T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																																														.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.												.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	Q	I	T	A	Q	A	W	D	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	E	I	S	V	S	L	A	D	K	K
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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