Job Description O43719 Confidence 99.76% Date Wed May 9 18:03:47 BST 2012 Rank 23 Aligned Residues 162 % Identity 15% Template c2g4bA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: structure of u2af65 variant with polyuridine tract Resolution 2.50 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K	L	H
Query Conservation
Alig confidence																																					.	.																														.
Template Conservation																																					.	.																														.
Template Sequence		R	R	L	Y	V	G	N	I	P	F	G	I	T	E	E	A	M	M	D	F	F	N	A	Q	M	R	L	G	G	L	T	Q	A	P	G	.	.	N	P	V	L	A	V	Q	I	N	Q	D	K	N	F	A	F	L	E	F	R	S	V	D	E	T	T	Q	A	M	.	A	F	D	G	I	I	F	Q	G	Q	S	L	K
Template Known Secondary structure		G						S			T	T																	T	T			S	S	S	S	.	.		S								T	T	T	T							S	S								G	.	G	G	T	T				T	T
Template Predicted Secondary structure																																					.	.																														.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E	D	L	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	R	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	Q	P	L	P	G	A	H	K	L	F	I	G	G	L	P	N	Y	L	N	.	.	.	.	.	.	.	.	.	.	.	D	D	Q	V	K
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S					T	T	T	T									T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230																																							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.												.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	.	.	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	R	Q	I	T	A	Q	A
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		E	L	L	T	S	F	G	P	L	K	A	F	N	L	V	K	D	S	A	T	G	L	S	K	G	Y	A	F	C	E	Y	V	D	I	N	V	T	D	Q	A	I	A	G	L	N	G	M	Q	L	G	D	K	K	L	L	V	Q	R
Template Known Secondary structure						T	T	S											T	T	T		S										S	S	T	T										T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions