Phyre 2 alignment of O43719 with c2e5hA

Job Description O43719
Confidence 99.60% Date Wed May 9 18:03:47 BST 2012

Rank 114 Aligned Residues 92

% Identity 24% Template c2e5hA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif- PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1

Resolution UNK

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence	K	R	K	A	E	S	G	W	F	H	V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E
Query Conservation																																																												.
Alig confidence																																														.	.	.	.	.	.	.	.							.
Template Conservation																																														.	.	.	.	.	.	.	.
Template Sequence	G	S	S	G	S	S	G	M	S	G	G	L	A	P	S	K	S	T	V	Y	V	S	N	L	P	F	S	L	T	N	N	D	L	Y	R	I	F	S	K	Y	G	K	V	V	K	.	.	.	.	.	.	.	.	V	T	I	M	K	D	K	D	T	R	K	S	K	G	V	A	F	I	L	F	L	D	K	D	S	A	Q
Template Known Secondary structure											S					T	T	S					S			T	T	S									T	T	T	T	S					.	.	.	.	.	.	.	.							S	S	S				T	T							S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Template SS confidence

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Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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