Job Description O43719 Confidence 99.64% Date Wed May 9 18:03:47 BST 2012 Rank 68 Aligned Residues 85 % Identity 20% Template c2do4A_ PDB info PDB header:immune system Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t- PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3 Resolution UNK

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence		E	K	H	K	L	F	I	S	G	L	P	F	S	C	T	K	E	E	L	E	E	I	C	K	A	H	G	T	V	K	D	.	.	.	.	.	.	.	.	L	R	L	V	T	N	R	A	G	K	P	K	G	L	A	Y	V	E	Y	E	N	E	S	Q	A	S	Q	A	V	M	K	M	D	G	M	T	I	K	E	N	I
Template Known Secondary structure				S						S			T	T											T	T	T	S					.	.	.	.	.	.	.	.							T	T	S											S	S												T	T			S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
		799	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.									830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
		211	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	V	E	V	A	K	F	Q	L	K	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	V	A	I	S	N	S	G	P	S	S	G
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		871	.	.	.	.	.	.	.	.	880	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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