Job Description O43719 Confidence 99.63% Date Wed May 9 18:03:47 BST 2012 Rank 86 Aligned Residues 94 % Identity 20% Template c2dnmA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:srp46 splicing factor; PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor Resolution UNK

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		H	V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D
Query Conservation																																																				.
Alig confidence																																						.	.	.	.	.	.	.	.							.
Template Conservation																																						.	.	.	.	.	.	.	.
Template Sequence		G	P	D	V	D	G	M	I	T	L	K	V	D	N	L	T	Y	R	T	S	P	D	S	L	R	R	V	F	E	K	Y	G	R	V	G	D	.	.	.	.	.	.	.	.	V	Y	I	P	R	E	P	H	T	K	A	P	R	G	F	A	F	V	R	F	H	D	R	R	D	A	Q	D	A	E	A	A	M	D	G	A
Template Known Secondary structure		S	S			S									S			T	T											T	T	T	S					.	.	.	.	.	.	.	.					B		S	S	S		S	B		S							S	S	S	S										S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	D	G	R	E	L	R	V	Q	V	A	R	Y	G	R	R	D	L	S	G	P	S
Template Known Secondary structure			B	T	T	B								S	S			S						S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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