Job Description O43719 Confidence 99.85% Date Wed May 9 18:03:47 BST 2012 Rank 13 Aligned Residues 168 % Identity 23% Template c2dhsA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1; PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna Resolution UNK

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																																		.				.	.
Query SS confidence																																																		.				.	.
Query Sequence		E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	.	.	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D
Query Conservation																																																		.				.	.
Alig confidence																																				.	.	.	.	.	.	.	.							.				.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		P	D	L	D	A	I	K	M	F	V	G	Q	V	P	R	T	W	S	E	K	D	L	R	E	L	F	E	Q	Y	G	A	V	Y	E	.	.	.	.	.	.	.	.	I	N	V	L	R	D	R	S	Q	N	P	P	Q	S	K	G	C	C	F	V	T	F	Y	T	R	K	A	A	L	E	A	Q	N	A	L	H	N	M
Template Known Secondary structure						S							S					S											T	T	S					.	.	.	.	.	.	.	.						S	T	T		S	S	S											S												S	S	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		K	V	L	P	G	M	H	H	P	I	Q	M	K	P	A	D	S	E	K	N	N	A	V	E	D	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	I	G	M	I	S	K	K	C	T	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S									G	G	G		S		G	G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.																																			110	.	.	.	.	.	.	.	.	.	120
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310				.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																												.	.	.
Query SS confidence																												.	.	.																												.	.	.
Query Sequence		N	E	I	R	E	D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	D	R	H	.	.	.	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	.	.	.	G	G	R	Q	I	T	A	Q	A	W	D
Query Conservation																												.	.	.																												.	.	.
Alig confidence		.	.	.																								.	.	.																												.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	E	N	D	I	R	V	M	F	S	S	F	G	Q	I	E	E	C	R	I	L	R	G	P	D	G	L	S	R	G	C	A	F	V	T	F	T	T	R	A	M	A	Q	T	A	I	K	A	M	H	Q	A	Q	T	M	E	G	C	S	S	P	M	V	V	K	F	A	D
Template Known Secondary structure		.	.	.										T	T	S											T	T	T											S	S												T	T	T			T	T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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