Job Description O43719 Confidence 99.52% Date Wed May 9 18:03:47 BST 2012 Rank 175 Aligned Residues 86 % Identity 19% Template c2dhaA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:flj20171 protein; PDBTitle: solution structure of the second rna recognition motif in2 hypothetical protein flj201171 Resolution UNK

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I
Query Conservation
Alig confidence																																								.	.	.	.																																.
Template Conservation																																								.	.	.	.																																.
Template Sequence		L	S	K	E	N	Q	V	I	V	R	M	R	G	L	P	F	T	A	T	A	E	E	V	V	A	F	F	G	Q	H	C	P	I	T	G	G	K	E	.	.	.	.	G	I	L	F	V	T	Y	P	D	G	R	P	T	G	D	A	F	V	L	F	A	C	E	E	Y	A	Q	N	A	L	R	.	K	H	K	D	L	L
Template Known Secondary structure						S								S			T	T												T	T	S			T	T	G	G	G	.	.	.	.	G							T	T	S											S	S									T	.	T	T	T			S
Template Predicted Secondary structure																																								.	.	.	.																																.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Y	K	L	H	V	E	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	R	Y	I	E	L	F	R	S	T
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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