Job Description O43719 Confidence 99.56% Date Wed May 9 18:03:47 BST 2012 Rank 141 Aligned Residues 87 % Identity 16% Template c2dguA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein q; PDBTitle: solution structure of the rna binding domain in2 heterogeneous nuclear ribonucleoprotein q Resolution UNK

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	K	V	K	V	L	F	V	R	N	L	A	N	T	V	T	E	E	I	L	E	K	A	F	S	Q	F	G	K	L	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	K	L	K	D	Y	A	F	I	H	F	D	E	R	D	G	A	V	K	A	M	E	E	M	N	G	K	D	L	E	G
Template Known Secondary structure															T	T														S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S							S	S												T	T				T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.																.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	I	E	I	V	F	A	K	P	P	D	Q	K	R	K	E	R	K	A	Q	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions