Job Description O43719 Confidence 99.12% Date Wed May 9 18:03:47 BST 2012 Rank 214 Aligned Residues 82 % Identity 15% Template c2d9oA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634 Resolution UNK

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		132	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.
Query Sequence		N	T	N	V	Y	V	S	.	.	.	.	.	.	.	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D
Query Conservation									.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.								.	.	.	.																								.
Template Conservation																																							.	.	.	.	.	.	.	.								.	.	.	.																								.
Template Sequence		T	P	K	L	K	L	K	W	K	C	K	K	E	D	E	S	K	G	G	Y	S	K	D	V	L	L	R	L	L	Q	K	Y	G	E	V	L	N	.	.	.	.	.	.	.	.	L	V	L	S	S	K	K	.	.	.	.	P	G	T	A	V	V	E	F	A	T	V	K	A	A	E	L	A	V	Q	N	E	V	G	.
Template Known Secondary structure		S											S	S		S				S												T	T	S					.	.	.	.	.	.	.	.					S	S	S	.	.	.	.	S	S							S											T			B	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.								.	.	.	.																								.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	L	V	D	N	P	L	K	I	S	W	L	E	G	Q	P	Q	D	A	S	G	P	S
Template Known Secondary structure		.		S	S	S	B						S	S							S	S
Template Predicted Secondary structure		.
Template SS confidence
			237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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