Job Description O43719 Confidence 99.81% Date Wed May 9 18:03:47 BST 2012 Rank 17 Aligned Residues 161 % Identity 20% Template c2cjkA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4; PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna Resolution UNK

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G
Query Conservation																																																.
Alig confidence																																		.	.	.	.	.	.	.	.							.
Template Conservation																																		.	.	.	.	.	.	.	.
Template Sequence		K	E	S	C	K	M	F	I	G	G	L	N	W	D	T	T	E	D	N	L	R	E	Y	F	G	K	Y	G	T	V	T	D	.	.	.	.	.	.	.	.	L	K	I	M	K	D	P	A	T	G	R	S	R	G	F	G	F	L	S	F	E	K	P	S	S	V	D	E	V	V	K	T	Q	H	I	L	D	G	K	V
Template Known Secondary structure			G	G	G						S			T	T											T	T	T						.	.	.	.	.	.	.	.							T	T	T	S	S			S							S	S	T									S					T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	P	K	R	A	I	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Q	D	K	T	G	K	I	F	V	G	G	I	G	P	D	V	R	.	.	.	.	.	.	.	.	.	.	.	P
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.																																									.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.												.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		E	D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	.	.	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	R	Q	I	T	A	Q	A	W	D	G	T
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.																								.
Template Conservation																																																.
Template Sequence		K	E	F	E	E	F	F	S	Q	W	G	T	I	I	D	A	Q	L	M	L	D	K	D	T	G	Q	S	R	G	F	G	F	V	T	Y	D	S	A	D	A	V	D	R	V	C	Q	.	N	K	F	I	D	F	K	D	R	K	I	E	I	K	R	A	E	P	R
Template Known Secondary structure										T	T	S			S							S	S	S	S	S	T	T	S								S	S										.		S				S	S	S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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