Job Description O43719 Confidence 99.94% Date Wed May 9 18:03:47 BST 2012 Rank 3 Aligned Residues 194 % Identity 18% Template c2adcA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1; PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna Resolution UNK

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		V	E	E	D	R	N	T	N	V	Y	V	S	G	L	.	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E
Query Conservation																.
Alig confidence																.																						.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.								.	.	.	.
Template Sequence		L	A	G	A	G	N	S	V	L	L	V	S	N	L	N	P	E	R	V	T	P	Q	S	L	F	I	L	F	G	V	Y	G	D	V	Q	R	.	.	.	.	.	.	.	.	V	K	I	L	F	N	K	.	.	.	.	K	E	N	A	L	V	Q	M	A	D	G	N	Q	A	Q	L	A	M	S	H	L	N	G	H	K
Template Known Secondary structure		G	G					S						S			T	T	T														T					.	.	.	.	.	.	.	.						T	T	.	.	.	.	S								S													T	T		B
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.								.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.									.	.	.	370	.	.	.					.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	G	Y	K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N
Query Conservation
Alig confidence																																		.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.																																					.	.	.	.	.	.	.	.	.
Template Sequence		L	H	G	K	P	I	R	I	T	L	S	K	H	Q	N	V	Q	L	P	R	E	G	Q	E	D	Q	G	L	T	K	D	Y	.	.	.	G	N	S	P	L	H	R	F	K	K	P	G	S	K	N	F	Q	N	I	F	P	P	S	A	T	L	H	L	S	N	I	P	P	S	V	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S	S	B							S									S	S	S	S	T	T	T	T					.	.	.	T	T		S	S					S	T	T	S	G	G	G	T	T				S		S									T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		E	I	R	E	D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	.	G	G	R	Q	I	T	A	Q	A
Query Conservation																																																						.
Alig confidence		.	.																																																			.
Template Conservation		.	.
Template Sequence		.	.	E	E	D	L	K	V	L	F	S	S	N	G	G	V	V	K	G	F	K	F	F	Q	K	D	R	K	M	A	L	I	Q	M	G	S	V	E	E	A	V	Q	A	L	I	D	L	H	N	H	D	L	G	E	N	H	H	L	R	V	S	F
Template Known Secondary structure		.	.										T	T	S										S	S	S	T	T							S	S												T	T		B	S	S	S	S		B
Template Predicted Secondary structure		.	.
Template SS confidence
				467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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