Job Description O43719 Confidence 99.51% Date Wed May 9 18:03:47 BST 2012 Rank 179 Aligned Residues 79 % Identity 25% Template c2adbA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1; PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd2 complexed with cucucu rna Resolution UNK

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	E	D	R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	.
Query Conservation																																																																																	.
Alig confidence																																				.	.	.	.	.	.	.	.						.	.	.																														.
Template Conservation																																				.	.	.	.	.	.	.	.						.	.	.
Template Sequence		G	Q	S	P	V	L	R	I	I	V	E	N	L	F	Y	P	V	T	L	D	V	L	H	Q	I	F	S	K	F	G	T	V	L	K	.	.	.	.	.	.	.	.	I	I	T	F	T	.	.	.	K	N	N	Q	F	Q	A	L	L	Q	Y	A	D	P	V	S	A	Q	H	A	K	L	S	L	D	G	Q	N	I	Y
Template Known Secondary structure											S		S			S	T	T										T	T	T	S					.	.	.	.	.	.	.	.						.	.	.		T	T									S														S			S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.						.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.									.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
			207	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	R	G	Y	K	L	H	V	E	V	A	K
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		N	A	C	C	T	L	R	I	D	F	S	K
Template Known Secondary structure		T	T										S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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