Job Description O43719 Confidence 99.94% Date Wed May 9 18:03:47 BST 2012 Rank 4 Aligned Residues 189 % Identity 19% Template c1qm9A_ PDB info PDB header:ribonucleoprotein Chain: A: PDB Molecule:polypyrimidine tract-binding protein; PDBTitle: nmr, representative structure Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		132	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		N	T	N	V	Y	V	S	G	L	.	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y	K
Query Conservation											.
Alig confidence											.																						.	.	.	.	.	.	.	.							.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		N	S	V	L	L	V	S	N	L	N	P	E	R	V	T	P	Q	S	L	F	I	L	F	G	V	Y	G	D	V	Q	R	.	.	.	.	.	.	.	.	V	K	I	L	F	N	.	.	.	.	K	K	E	N	A	L	V	Q	M	A	D	G	N	Q	A	Q	L	A	M	S	H	L	N	G	H	K	L	H	G	K	P
Template Known Secondary structure												S	S	S												T	T				S		.	.	.	.	.	.	.	.				S	T	T	.	.	.	.		S	S							T	T	T											T	T				S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.									.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E	D
Query Conservation
Alig confidence																													.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	I	T	L	S	K	H	Q	N	V	Q	L	P	R	E	G	Q	E	D	Q	G	L	T	K	D	Y	.	.	.	G	N	S	P	L	H	R	F	K	K	P	G	S	K	N	F	Q	N	I	F	P	P	S	A	T	L	H	L	S	N	I	P	P	S	V	S	.	.	.	.	.	.	.	.	.	.	.	E	E	D
Template Known Secondary structure											S				S	S	S	S	S	S	S	S	S					S	.	.	.	S				T	T	S	S	S	S							S																T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	.	W	F	G	G	R	Q	I	T	A	Q	A
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		L	K	V	L	F	S	S	N	G	G	V	V	K	G	F	K	F	F	Q	K	D	R	K	M	A	L	I	Q	M	G	S	V	E	E	A	V	Q	A	L	I	D	L	H	N	H	D	L	G	E	N	H	H	L	R	V	S	F
Template Known Secondary structure									T	T	S								S	S	T	T	S	S							S	S												T	S	S			S	S			S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions