Job Description O43719 Confidence 99.86% Date Wed May 9 18:03:47 BST 2012 Rank 11 Aligned Residues 159 % Identity 27% Template c1b7fA_ PDB info PDB header:rna-binding protein/rna Chain: A: PDB Molecule:protein (sxl-lethal protein); PDBTitle: sxl-lethal protein/rna complex Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		R	N	T	N	V	Y	V	S	G	L	P	P	D	I	T	V	D	E	F	I	Q	L	M	S	K	F	G	I	I	M	R	D	P	Q	T	E	E	F	K	V	K	L	Y	K	D	.	N	Q	G	N	L	K	G	D	G	L	C	C	Y	L	K	R	E	S	V	E	L	A	L	K	L	L	D	E	D	E	I	R	G	Y
Query Conservation																																															.
Alig confidence																																	.	.	.	.	.	.	.	.							.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence		S	N	T	N	L	I	V	N	Y	L	P	Q	D	M	T	D	R	E	L	Y	A	L	F	R	A	I	G	P	I	N	T	.	.	.	.	.	.	.	.	C	R	I	M	R	D	Y	K	T	G	Y	S	Y	G	Y	A	F	V	D	F	T	S	E	M	D	S	Q	R	A	I	K	V	L	N	G	I	T	V	R	N	K
Template Known Secondary structure				S									T	T												T	T	S					.	.	.	.	.	.	.	.							T	T	T	T				S							S	S												T	T				T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.									.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	H	V	E	V	A	K	F	Q	L	K	G	E	Y	D	A	S	K	K	K	K	K	C	K	D	Y	K	K	K	L	S	M	Q	Q	K	Q	L	D	W	R	P	E	R	R	A	G	P	S	R	M	R	H	E	R	V	V	I	I	K	N	M	F	H	P	M	D	F	E	D	D	P	L	V	L	N	E	I	R	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	K	V	S	Y	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	G	E	S	I	K	D	T	N	L	Y	V	T	N	L	P	R	T	I	T	.	.	.	.	.	.	.	.	.	.	.	D	D
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	T	T	T	T							S			T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.																																							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.												.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																	.	.
Query SS confidence																				.	.	.	.																																	.	.
Query Sequence		D	L	R	V	E	C	S	K	F	G	Q	I	R	K	L	L	L	F	.	.	.	.	D	R	H	P	D	G	V	A	S	V	S	F	R	D	P	E	E	A	D	Y	C	I	Q	T	L	D	G	R	W	F	G	G	.	.	R	Q	I	T	A	Q	A
Query Conservation																				.	.	.	.																																	.	.
Alig confidence																				.	.	.	.																																	.	.
Template Conservation
Template Sequence		Q	L	D	T	I	F	G	K	Y	G	S	I	V	Q	K	N	I	L	R	D	K	L	T	G	R	P	R	G	V	A	F	V	R	Y	N	K	R	E	E	A	Q	E	A	I	S	A	L	N	N	V	I	P	E	G	G	S	Q	P	L	S	V	R	L
Template Known Secondary structure								T	S	S	S											T	T	T												S	S												T	T				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions