Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence97.69%DateThu Apr 26 09:30:17 BST 2012
Rank169Aligned Residues153
% Identity22%Templatec4drzA_
PDB info PDB header:protein transportChain: A: PDB Molecule:ras-related protein rab-14; PDBTitle: crystal structure of human rab14
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
Query Conservation   





 







 





    

  
       
  

      

                            
Alig confidence 
















...............................................................
Template Conservation   

 


   






...............................................................
Template Sequence  FKYIIIGDMGVGKSCLL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  STTSS...............................................................
Template Predicted Secondary structure 





...............................................................
Template SS confidence 















































































   12.......20........
 
   120.........130.........140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
Query Conservation         
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
 

 
  
     
Alig confidence  .............................................












.......














Template Conservation  ............................................. 
     
     ....... 
             
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HQFTEKKCPHTIG. . . . . . . VEFGTRIIEVSGQKI
Template Known Secondary structure  .............................................


TTS

.......


SS
Template Predicted Secondary structure  .............................................





.......
Template SS confidence 















































































   2930.........40. ........50......
 
   200.........210.........220.........230.........240.........250.........260.........270.........
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
Query Conservation       





  
 

   
  
  




 


 

 
 

   


 


 

  
          


 


 


Alig confidence 









......


















...........

































Template Conservation            ......                   ...........                                  
Template Sequence  KLQIWDTAAV. . . . . . TRSYYRGAAGALMVYDITR. . . . . . . . . . . RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE
Template Known Secondary structure 


......TTT
...........TS
TT

TT
G
Template Predicted Secondary structure 




......








...........




















Template SS confidence 















































































   61........70 .........80......... 90.........100.........110.........120...
 
   280.........290.........300.........310.........320.........330.........340.........350
Predicted Secondary structure 






















Query SS confidence 






































































Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ
Query Conservation    

    
   



 
           
   
        
    
 
 
 

  
  
   
   
  
Alig confidence 


................













..........



























Template Conservation     ................              ..........     
 




 

 


  
   
  
Template Sequence  AQR. . . . . . . . . . . . . . . . DVTYEEAKQFAEEN. . . . . . . . . . GLLFLEASAKTGENVEDAFLEAAKKIYQ
Template Known Secondary structure  GG
................
S
..........T


TTT
TTT
Template Predicted Secondary structure  ................



..........








Template SS confidence 






































































   130.. .......140...... ...150.........160.........170....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions