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Job DescriptionP50148
Confidence97.91%DateThu Apr 26 09:30:17 BST 2012
Rank144Aligned Residues182
% Identity22%Templatec3izq1_
PDB info PDB header:ribosomal protein,hydrolaseChain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
Resolution9.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  LPHLSFVVLGHVDAGKSTLMGRL. LYDLNIVNQSQLRKLQRE. . . . . . . . . . . . . . . . . . . . SETMGKSSFKFAWIMDQT
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   165....170.........180....... ..190.........200..... ....210.........220...
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  NEER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ERGVTVSICTSHFST
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   224... ..230.........240..
 
   197..200.........210.........220.........230.... .....240.........250.........260.......
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE. . . . . . . . . YDQVLVESDNENRMEESKALFRTIITYPWFQNS
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Template Sequence  HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT. . . . . . . . . . KEHMLLASSL. . . . . . . GI
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   243......250.........260.........270.........280.........290... ......300... ..
 
   268 .270.........280.........290.........300.........310........ .320.........330.......
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Query Sequence  S. VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP. . . DSDKIIYSHFTCATDTENI
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Template Sequence  HNLIIAMNKMDN. . . . . . . . . . . . . . . . . . . . VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV
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   306...310....... ..320.........330.........340.........350.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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