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Job DescriptionP50148
Confidence98.16%DateThu Apr 26 09:30:17 BST 2012
Rank103Aligned Residues114
% Identity21%Templatec1zo1I_
PDB info PDB header:translation/rnaChain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
Resolution13.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  PRAPVVTIMGHVDHGKTSLLEYIRST. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   225....230.........240.........250
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KVASGEA. . . . . . . . . . GGITQHIGAYHVET
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   251...... ..260.........270.
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK
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Template Sequence  ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD. . . . . . . . GVMPQTIEAIQHAKAA. . . . . . . QVPVVVAVNKI
Template Known Secondary structure  TSS





TTT

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   272.......280.........290.........300......... 310.........320..... ....330......
 
   277.
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Query Sequence  DL
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Template Sequence  DK
Template Known Secondary structure  SS
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   337.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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