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Job DescriptionP50148
Confidence96.58%DateThu Apr 26 09:30:17 BST 2012
Rank222Aligned Residues134
% Identity26%Templatec3mcaA_
PDB info PDB header:translation regulation/hydrolaseChain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
Resolution2.74 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  KPVVHLVVTGHVDSGKSTMLGRI. . MFELGEI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   175....180.........190....... ..200....
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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   197..200.........210.........220.........230.........240.........250.........260........ .270.....
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS. VILFLNK
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Template Sequence  . . . . . . IGDAPGHRDFISGMIAAVLVVDSSQNNFERGF. . . . . . . . LENGQTREHAYLLR. . . . . . . ALGISEIVVSVNK
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   259260.........270.........280.........290 .........300.... .....310.......
 
   276...280.........290.........300.........310.........320.........330.......
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Query Sequence  KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI
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Template Sequence  LDLMSWS. . . . . . . . . . . . . . . . EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL
Template Known Secondary structure  GGGGTT
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   325....330. ........340.........350.........360.........370
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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