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Job DescriptionP50148
Confidence98.13%DateThu Apr 26 09:30:17 BST 2012
Rank106Aligned Residues170
% Identity21%Templatec2lkcA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor if-2; PDBTitle: free b.st if2-g2
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  ERPPVVTIMGHVDHGKTTLLD. . AIRHSK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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S
TTTT..TT
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   6...10.........20...... ...30..
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Conservation  ...................................................        .........            
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VTEQEAGG. . . . . . . . . ITQHIGAYQVTV
Template Known Secondary structure  ...................................................SS
SS

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   33......40 .........50..
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK
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Template Sequence  NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD. . . . . . . . . . GVMPQTVEAINHAKAANV. . . . . PIIVAINKM
Template Known Secondary structure  TTS


SSSSSS
S

SS




TT
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GGGS
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TT
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   53......60.........70.........80.........90 .........100........ .110.......
 
   277..280.........290.........300.........310.........320.........330.........340.........350....
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Query Sequence  DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK
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Template Sequence  DK. . . . . . . . . . . . . . . . . . . . PEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK
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TTTT

BTTTTSS

SSSSTTTT
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   118. 120.........130.........140.........150.........160.........170.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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