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Job DescriptionP50148
Confidence98.39%DateThu Apr 26 09:30:17 BST 2012
Rank72Aligned Residues176
% Identity16%Templatec2xtpA_
PDB info PDB header:immune systemChain: A: PDB Molecule:gtpase imap family member 2; PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
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Template Sequence  SELRIILVGKTGTGKSAAGNSILR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TTS
T........................................................
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   21........30.........40....
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KQAFESKLGSQ. . . . . . . . TLTKTCSKSQGSWG
Template Known Secondary structure  ...............................................S

S


TTS
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S
T
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   45....50..... ....60.........
 
   198.200........ .210.........220.........230.........240.........250.........260......
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Query Sequence  SVIFRMVDVGG. . . . . . . . . . . QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN
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Template Sequence  NREIVIIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR. . . . . . . . . YTSQDQQAAQRVKEIFGEDAXG.
Template Known Secondary structure  T

GGGGSS


TT

STT
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GGGGG.
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   70.........80.........90.........100.........110....... ..120.........130.........
 
   267..270.........280.........290.........300.........310.........320....... ..330.........340...
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Query Sequence  SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH. . . FTCATDTENIRFVFAA
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Template Sequence  . HTIVLFTHKEDLNGG. . . . . . . . . . . . . . . . . SLXDYXHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELXDC
Template Known Secondary structure  .G
GGGGTT
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TTT


TT

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   140.........150.... .....160.........170.........180.........190.........200.
 
   344.....350..
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Query Sequence  VKDTILQLN
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Template Sequence  IEDLLXEKN
Template Known Secondary structure  TT
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   202.......210
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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