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Job DescriptionP50148
Confidence97.71%DateThu Apr 26 09:30:17 BST 2012
Rank167Aligned Residues172
% Identity21%Templatec1zbdA_
PDB info PDB header:g proteinChain: A: PDB Molecule:rabphilin-3a; PDBTitle: structural basis of rab effector specificity: crystal2 structure of the small g protein rab3a complexed with the3 effector domain of rabphilin-3a
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
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Template Sequence  YXFKILIIGNSSVGKTSFLFRYA. . . DDSFTPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   21........30.........40... ......50
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FVSTVGIDFKVKTIYRNDKRIKL. . .
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   51........60.........70...
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD
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Template Sequence  . . . . QIWDTAGLERYRTITTAYYRGAXGFILXYDITN. . . . . . . . . . . EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD
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SGGGTTGGG
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   74.....80.........90.........100...... ...110.........120.........130........
 
   278.280.........290.........300.........310.........320.........330.........340.........350.......
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Query Sequence  LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYN
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Template Sequence  X. . . . . . . . . . . . . . . . . EDERVVSSERGRQLADHLG. . . . . . . . . FEFFEASAKDNINVKQTFERLVDVICEKXSESLD
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   139 140.........150........ .160.........170.........180.........190..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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