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Job DescriptionP50148
Confidence97.72%DateThu Apr 26 09:30:17 BST 2012
Rank165Aligned Residues153
% Identity20%Templatec2hupB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:ras-related protein rab-43; PDBTitle: crystal structure of human rab43 in complex with gdp
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKLVLVGDASVGKTCVVQRF. . . KTGAF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TTSS...S

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   1920.........30........ .40...
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DFTMKTLEIRV
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   54.....60....
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  KLQIWDTAGQERFRTITQSYYRSANGAILAYDITK. . . . . . . . . . . RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS
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TT
GGGTT
STT
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S


GGGG
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   68.70.........80.........90.........100.. .......110.........120.........130......
 
   280.........290.........300.........310.........320.........330.........340.........350..
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN
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Template Sequence  ELR. . . . . . . . . . . . . . . . EVSLAEAQSLAE. . . . . . . . . HYDILCAIETSAKDSSNVEEAFLRVATELIMRH
Template Known Secondary structure  GG
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TTT
TT
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   137.. 140.........150. ........160.........170.........180....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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