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Job DescriptionP50148
Confidence98.39%DateThu Apr 26 09:30:17 BST 2012
Rank73Aligned Residues172
% Identity15%Templatec1d2eA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  KPHVNVGTIGHVDHGKTTLTAAIT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   55....60.........70........
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST
Template Known Secondary structure  .........................................TTSB



S

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   7980.........90.........100.........110.......
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK
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Template Sequence  AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND. . . . . . . . . . . . . . GPMPQTREHLLLARQIGVEHVVVYVNKA
Template Known Secondary structure  SS

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STTT..............
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G
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   118.120.........130.........140.........150..... ....160.........170.........180...
 
   277..280.........290.........300.........310.........320.........330.......
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Query Sequence  DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI
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Template Sequence  DA. . . . . . . . . . . . . . . . . . VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ
Template Known Secondary structure  GG..................
S
TTS
TTTS


TT
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   184. ....190.........200.........210.........220......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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