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Job DescriptionP50148
Confidence97.71%DateThu Apr 26 09:30:17 BST 2012
Rank168Aligned Residues170
% Identity23%Templatec3clvA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  ARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVRE
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Template Sequence  KKSSYKTVLLGESSVGKSSIVLRL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   4.....10.........20.......
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
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Query Sequence  VDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TKDTFHENTNTTIGASFCTYVVNL. NDNYNEN
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S
T.T



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   28.30.........40.........50. .......
 
   196...200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK
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Template Conservation                                         .............                      
     
Template Sequence  LCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN. . . . . . . . . . . . . SNTLDRAKTWVNQLKISSNYIIILVANK
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TTGGG
TTTTT
STT
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   90.........100.........110.........120........ .130.........140.........150......
 
   276...280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  IDK. . . . . . . . . . . . . . . . . . . NFQVDILEVQKYAQDN. . . . . . . . . NLLFIQTSAKTGTNIKNIFYMLAEEIYKN
Template Known Secondary structure  TT
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T.........T

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   157.. 160.........170..... ....180.........190.........200....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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