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Job DescriptionP50148
Confidence98.25%DateThu Apr 26 09:30:17 BST 2012
Rank89Aligned Residues170
% Identity22%Templatec3p27A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: crystal structure of s. cerevisiae hbs1 protein (gdp-bound form), a2 translational gtpase involved in rna quality control pathways and3 interacting with dom34/pelota
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100........
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Query Sequence  LRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKA
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Template Sequence  ISAFVKSALPHLSFVVLGHVDAGKSTLXGRL. LYDLNIVNQSQLRKLQR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   157..160.........170.........180....... ..190.........200....
 
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Query Sequence  HAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTG
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   218.220.......
 
   189190.........200.........210.........220.........230.........240.........250.........260........
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Query Sequence  IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS
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Template Sequence  ICTSHFSTHRANFTIVDAPGVPNA. . . . IXGISQADXAILCVDCSTFDL. . . . . . . DGQTKEHXLLAS. . . . . . SLGIHN
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   235....240.........250........ .260.........270......... 280.........290. ......
 
   269270.........280.........290.........300.........310........ .320.........330.......
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Query Sequence  VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP. . . DSDKIIYSHFTCATDTENI
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Template Sequence  LIIAXNKXDN. . . . . . . . . . . . . . . . . . . . VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV
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GGG....................GTT
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   308.310....... ..320.........330.........340.........350.........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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