Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence97.03%DateThu Apr 26 09:30:17 BST 2012
Rank214Aligned Residues127
% Identity20%Templatec1m2oD_
PDB info PDB header:protein transport/signaling proteinChain: D: PDB Molecule:gtp-binding protein sar1; PDBTitle: crystal structure of the sec23-sar1 complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190.........200.........210.........220.........230.........240.........250.........260....
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF
Query Conservation   
 

 
  
          





  
 

   
  
  




 


 

 
 

   


 


 

  
      
Alig confidence 

















































..........



















Template Conservation                                                    ..........                    
Template Sequence  PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD. . . . . . . . . . PERFDEARVELDALFNIAEL
Template Known Secondary structure 


S

SSS


SSGGGGT
TT




TT
..........GGGT
GGG
Template Predicted Secondary structure 















..........




Template SS confidence 















































































   53......60.........70.........80.........90.........100.. .......110.........120..
 
   265....270.........280.........290.........300.........310.........320.........330.........340....
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV
Query Conservation      


 


 


  

    
   



 
           
   
        
    
 
 
 

  
  
   
Alig confidence 













..................









.....
































Template Conservation         
  
 
 ..................          .....                  

 

 

 
 
  
Template Sequence  KDVPFVILGNKIDA. . . . . . . . . . . . . . . . . . PNAVSEAELR. . . . . SALGLLNTTGRPVEVFMCSVVMRNGYLEAFQWL
Template Known Secondary structure  TT

B

B


TTS..................TT


.....TT
SS




B

B

BTTTTBS
Template Predicted Secondary structure 













..................




.....











Template SS confidence 















































































   123......130...... ...140...... ...150.........160.........170.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions