Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence98.14%DateThu Apr 26 09:30:17 BST 2012
Rank105Aligned Residues159
% Identity22%Templatec3lxxA_
PDB info PDB header:immune systemChain: A: PDB Molecule:gtpase imap family member 4; PDBTitle: crystal structure of human gtpase imap family member 4
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
Query Conservation     





 







 





    

  
       
  

      

                          
Alig confidence 






















.........................................................
Template Conservation      
 
 
  
 






 
 .........................................................
Template Sequence  SQLRIVLVGKTGAGKSATGNSIL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


TTSS.........................................................
Template Predicted Secondary structure 







.........................................................
Template SS confidence 















































































   2930.........40.........50.
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
Query Conservation           
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
 

 
  
   
Alig confidence  ...................................................






..........











Template Conservation  ...................................................      
..........
           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GRKVFHS. . . . . . . . . . TKKCEKRSSSWK
Template Known Secondary structure  ...................................................TS

S

..........

S
T
Template Predicted Secondary structure  ...................................................






..........


Template SS confidence 















































































   52...... .60.........70
 
   198.200......... 210.........220.........230.........240.........250.........260.........270.
Predicted Secondary structure 





......
















Query SS confidence 











. . . . . .





























































Query Sequence  SVIFRMVDVGGQ. . . . . . RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL
Query Conservation         




......
  
 

   
  
  




 


 

 
 

   


 


 

  
          


Alig confidence 











......
























.........





















..



Template Conservation         



                          
     .........                      ..  

Template Sequence  ETELVVVDTPGIFNAETSKEIIRCILLTSPGPHALLLVVPLGR. . . . . . . . . YTEEEHKATEKILKXFGERARS. . FXIL
Template Known Secondary structure  T

S


TTT

STT
.........
SSGG..G
Template Predicted Secondary structure 






















.........




..

Template SS confidence 















































































   78.80.........90.........100.........110.........120 .........130.........140.. ....
 
   272.......280.........290.........300.........310.........320.........330.........340.........350.
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
Query Conservation   


 


  

    
   



 
           
   
        
    
 
 
 

  
  
   
   
   
Alig confidence 













...........................






































Template Conservation 
 

 
        ...........................                 
      
  

  
   
  
Template Sequence  IFTRKDDLPEDIQD. . . . . . . . . . . . . . . . . . . . . . . . . . . LXDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN
Template Known Secondary structure 
GGG

...........................SSS

TT


Template Predicted Secondary structure 





...........................











Template SS confidence 















































































   152.......160..... ....170.........180.........190.........200....
 
   352
Predicted Secondary structure 
Query SS confidence 
Query Sequence  N
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  K
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 
   217
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions