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Job DescriptionP50148
Confidence99.83%DateThu Apr 26 09:30:17 BST 2012
Rank26Aligned Residues188
% Identity27%Templatec3lvrE_
PDB info PDB header:protein transportChain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
Resolution3.38 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  CLSEEAKEARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQA
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Template Sequence  GETALDIARKKHHKECEELLEQAQA. . NKEMRILMLGLDAAGKTTILYKLKLGQSVT. . . . . . . . . . . . . . . . . . . . . . .
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Query Sequence  MIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD
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   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  PAYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRME
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Template Sequence  . . . . . . . . . . . . . TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD. . . . . . . . . . RDRID
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Query Sequence  ESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT
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Template Sequence  EARQELHRIINDREMRDAIILIFANKQDL. . . . . . . . . . . . . . . . . . . . PDAMKPHE. . . IQEKLGLTRIRDRNWYVQPS
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   98.100.........110.........120...... ...130.... .....140.........150....
 
   330.........340........
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Query Sequence  CATDTENIRFVFAAVKDTI
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Template Sequence  CATSGDGLYEGLTWLTSNY
Template Known Secondary structure  BTTTTBT
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   155....160.........170...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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