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Job DescriptionP50148
Confidence98.26%DateThu Apr 26 09:30:17 BST 2012
Rank88Aligned Residues126
% Identity18%Templatec2yc2D_
PDB info PDB header:transport proteinChain: D: PDB Molecule:small rab-related gtpase; PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas
Resolution2.59 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   184.....190.. ...... .200.........210.........220.........230.........240.........250.....
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Query Sequence  VPTTGIIEY. . . . PFDLQS. . . . VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF
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Template Sequence  TATLRCKVAVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS. . . . . . . . . . MESFESCKAWF
Template Known Secondary structure  S


TTSSTTTTSTT




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   12.......20.........30.........40.........50.........60.........70 .........80.
 
   256...260 .........270.........280.........290.........300.........310.........320.........330...
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Query Sequence  RTIIT. . YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD
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Template Sequence  ELLKSARPDRERPLRAVLVANKTQV. . . . . . . . . . . . . . . . . . . . . . RLDMAQDWATTN. . . . . . . . . . TLDFFDVSAAD
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   116...120.........130.........140 .........150.. .......160...
 
   334 .....340.........350.
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Query Sequence  T. . ENIRFVFAAVKDTILQL
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Template Sequence  APFLSIATTFYRNYEDKVAA
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   177..180.........190......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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