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Job DescriptionP50148
Confidence97.75%DateThu Apr 26 09:30:17 BST 2012
Rank162Aligned Residues161
% Identity24%Templatec2f9lA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rab11b, member ras oncogene family; PDBTitle: 3d structure of inactive human rab11b gtpase
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKVVLIGDSGVGKSNLLS. . RFTRNE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTTSS..S
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FNLSTIGVEFATRSIQVDGKTIK. . . . . . . . .
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  . AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK. . . . . . . . . . . HLTYENVERWLKELRDHADSNIVIMLVGNKSDLR
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SSGGGTT


TT
STT
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G
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   62.......70.........80.........90..... ....100.........110.........120.........
 
   280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  HLR. . . . . . . . . . . . . . . . AVPTDEARAFAEKN. . . . . . . . . . NLSFIETSALDSTNVEEAFKNILTEIYRI
Template Known Secondary structure  GG
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   130.. .......140...... ...150.........160.........170.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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