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Job DescriptionP50148
Confidence97.13%DateThu Apr 26 09:30:17 BST 2012
Rank209Aligned Residues154
% Identity19%Templatec2il1A_
PDB info PDB header:protein transportChain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.........80.........90.........100.........110........
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Query Sequence  ELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDV
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Template Sequence  KLQVIIIGSRGVGKTSLMERFT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   138.140.........150.........
 
   119120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  EKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ.
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DSTVGVDFKIKTVEL
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TT
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   160.........170....
 
   198.200.........210.........220.........230.........240.........250.........260.........270....
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Query Sequence  . . . SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN
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Template Sequence  RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK. . . . . . . . . . . KETFDDLPKWMKMIDKYASEDAELLLVGN
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SGGG
STT
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TT
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   183......190.........200.........210.........220.. .......230.........240.........250.
 
   275....280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  KLDCETDR. . . . . . . . . . . . . . . . EITRQQGEKFAQ. . . . . . . . . QITGMRFCEASAKDNFNVDEIFLKLVDDILKK
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GGGGGG
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BTTTTBST
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   252....... 260.........270. ........280.........290.........300...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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