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Job DescriptionP50148
Confidence98.02%DateThu Apr 26 09:30:17 BST 2012
Rank123Aligned Residues161
% Identity20%Templatec1z06A_
PDB info PDB header:protein transportChain: A: PDB Molecule:ras-related protein rab-33b; PDBTitle: gppnhp-bound rab33 gtpase
Resolution1.81 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
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Template Sequence  RIFKIIVIGDSNVGKTCLTYRF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   32.......40.........50...
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CAGRFPDRTEATIGVDFRERAVDIDGERIKIQ. .
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   54.....60.........70.........80.....
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD
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Template Sequence  . . . . LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN. . . . . . . . . . MASFHSLPAWIEECKQHLLANDIPRILVGNKCD
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   86...90.........100.........110........ .120.........130.........140.........150.
 
   278.280.........290.........300.........310.........320.........330..... ....340....
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Query Sequence  LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE. . . NIRFVFAAV
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Template Sequence  LRSAI. . . . . . . . . . . . . . . . QVPTDLAQKFADTH. . . . . . . . . . SMPLFETSAKNPNDNDHVEAIFMTL
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GGG
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   152.... ...160.........170 .........180.........190.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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