Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence98.72%DateThu Apr 26 09:30:17 BST 2012
Rank45Aligned Residues122
% Identity27%Templatec3dpuA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:rab family protein; PDBTitle: roccor domain tandem of rab family protein (roco)
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30........ .40.........50.........60.........70.........80.........90.........100.
Predicted Secondary structure 

.....
















Query SS confidence 











. . . . .






























































Query Sequence  RQLRRDKRDARR. . . . . ELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY
Query Conservation    
  

     .....  





 







 





    

  
       
  

      

          
Alig confidence 











.....





















.........................................
Template Conservation    
                

 


   





   
 .........................................
Template Sequence  QSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


B


SSS
SS.........................................
Template Predicted Secondary structure 














.........................................
Template SS confidence 















































































   435....440.........450.........460.........470...
 
   102.......110.........120.........130.........140.........150.........160.........170.........180.
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  KYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLR
Query Conservation                           
    
  

 
  

    
  
  
 
   


  
 

    
 

  


 
Alig confidence  .........................................................................






Template Conservation  .........................................................................       
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGLNVVT
Template Known Secondary structure  .........................................................................



Template Predicted Secondary structure  .........................................................................






Template SS confidence 















































































   474.....480
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY
Query Conservation   
  
 

 
  
          





  
 

   
  
  




 


 

 
 

   


 


 

  
   
Alig confidence 




















































..........
















Template Conservation       
  
          
 



 


 
  

  

      


 
   ..........      

  
      
Template Sequence  KQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT. . . . . . . . . . DSNKHYWLRHIEKYGGK
Template Known Secondary structure  GGGSGGGTT
STTTT



S

TTTTT
SS
GGG..........GGGSSS
Template Predicted Secondary structure 
















..........


Template SS confidence 















































































   492.......500.........510.........520.........530.........540.... .....550.........560.
 
   262.......270.......
Predicted Secondary structure 




Query SS confidence 















Query Sequence  PWFQNSSVILFLNKKD
Query Conservation         


 


 
Alig confidence  .....










Template Conservation  ..... 




 

 
Template Sequence  . . . . . SPVIVVMNKID
Template Known Secondary structure  .....



TT
Template Predicted Secondary structure  .....

Template SS confidence 















   562.......570..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions