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Job DescriptionP50148
Confidence98.44%DateThu Apr 26 09:30:17 BST 2012
Rank68Aligned Residues175
% Identity18%Templatec1mj1A_
PDB info PDB header:ribosomeChain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
Resolution13.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60.........70.........80.........90.........100.........110....
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Query Sequence  DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVR
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Template Sequence  RTKRHVNVGTIGHVDHGKTTLTAALTY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   7..10.........20.........30...
 
   115....120.........130.........140.........150.........160.........170.........180.........190....
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Query Sequence  EVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . VAAAENRNVEVKDYGDIDKAREERARGI. . . . . . . . . . . . . . . . . TINTAHVEY
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   34.....40.........50.........60. ........70
 
   195....200.........210.........220.........230.........240.........250.........260.........270....
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Query Sequence  DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN
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Template Sequence  ETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAAD. . . . . . . . . . . GRMRQTREHILLA. . . RQVGVRYIVVFMN
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SGGGTT
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   71........80.........90.........100.........110 .........120... ......130......
 
   275....280.........290.........300... ......310.........320.........330.........
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Query Sequence  KKDLLEEKIMYSHLVDYFPEYDGPQRDAQ. . AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF
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Template Sequence  KVDM. . . . . . . . . . . . . . . . . . . . VDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMH
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   137..140 .........150.........160.........170.........180...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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