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Job DescriptionP50148
Confidence97.87%DateThu Apr 26 09:30:17 BST 2012
Rank147Aligned Residues165
% Identity21%Templatec3tw8B_
PDB info PDB header:protein transportChain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKLLIIGDSGVGKSSLLLRF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

TTS
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   910.........20........
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Conservation  ...............................................           .......               
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ADNTSYITTIG. . . . . . . VDFKIRTVEINGEKV
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S



TTTTS.......TT
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   2930......... 40.........50....
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS. . . . . . . . . . . . AESFVNVKRWLHEINQNCDDVCRILVGNKNDDP
Template Known Secondary structure  TTGGG
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GGGGTT
STT
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TT
G
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   58.60.........70.........80.........90.. .......100.........110.........120.....
 
   280.........290.........300.........310.........320.........330.........340.........350......
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEY
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Template Sequence  ERK. . . . . . . . . . . . . . . . VVETEDAYKFAGQMGIQ. . . . . . . . . . LFETSAKENVNVEEMFNCITELVLRAKKDNL
Template Known Secondary structure  GG
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BTTTTBS
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   126.. .130.........140..... ....150.........160.........170......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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