Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence98.72%DateThu Apr 26 09:30:17 BST 2012
Rank46Aligned Residues170
% Identity23%Templatec1wb1C_
PDB info PDB header:protein synthesisChain: C: PDB Molecule:translation elongation factor selb; PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
Query Conservation     





 







 





    

  
       
  

      

                          
Alig confidence 




























...................................................
Template Conservation 
 


 
 



 




   
       ...................................................
Template Sequence  KNINLGIFGHIDHGKTTLSKVLTEIASTS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  B





TTSSTTTTTSS
S...................................................
Template Predicted Secondary structure 











...................................................
Template SS confidence 















































































   4.....10.........20.........30..
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
Query Conservation           
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
 

 
  
   
Alig confidence  ...................................................









....














Template Conservation  ...................................................  
    
  .... 



          
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AHDKLPESQK. . . . RGITIDIGFSAFKLE
Template Known Secondary structure  ...................................................S
SSSSTTTT....S




SS

T
Template Predicted Secondary structure  ...................................................






....


Template SS confidence 















































































   33......40.. .......50.......
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD
Query Conservation         





  
 

   
  
  




 


 

 
 

   


 


 

  
          


 


 
Alig confidence 




































........















.......











Template Conservation     
 






  
           
  





  ........
    
 
 
      ....... 

 





 
Template Sequence  NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE. . . . . . . . GPKTQTGEHMLILDHF. . . . . . . NIPIIVVITKSD
Template Known Secondary structure  T



SSSS
SS




TTT........


T.......T





T
Template Predicted Secondary structure 








........



.......





Template SS confidence 















































































   58.60.........70.........80.........90.... .....100.........110 .........120..
 
   278.280.........290.........300.........310.........320.........330.........340........
Predicted Secondary structure 






















Query SS confidence 






































































Query Sequence  LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI
Query Conservation 

  

    
   



 
           
   
        
    
 
 
 

  
  
   
   
Alig confidence 
...................




















.




























Template Conservation   ...................                
    .      

 


  
 

  
   
    
Template Sequence  N. . . . . . . . . . . . . . . . . . . AGTEEIKRTEMIMKSILQSTH. NLKNSSIIPISAKTGFGVDELKNLIITTL
Template Known Secondary structure  T...................S
SS.GGGG


TTTTTT
Template Predicted Secondary structure 
...................




.











Template SS confidence 






































































   123 ......130.........140.... .....150.........160.........170...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions