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Job DescriptionP50148
Confidence97.92%DateThu Apr 26 09:30:17 BST 2012
Rank143Aligned Residues168
% Identity21%Templatec2oilA_
PDB info PDB header:protein transportChain: A: PDB Molecule:ras-related protein rab-25; PDBTitle: crystal structure of human rab25 in complex with gdp
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKVVLIGESGVGKTNLLSRFT. . . RNEFS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTTSS...S


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   13......20.........30... .....
 
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HDSRTTIGVEFSTRTVMLGTAAVKAQIW. .
Template Known Secondary structure  ..................................................SS



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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  . . . . . DTAGLERYRAITSAYYRGAVGALLVFDLTK. . . . . . . . . . . HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS
Template Known Secondary structure  .....S


TT
TTTT

TT
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TT

GGGG
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   67..70.........80.........90...... ...100.........110.........120.........130
 
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKE
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Template Sequence  QAR. . . . . . . . . . . . . . . . EVPTEEARMFAEN. . . . . . . . . . NGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ
Template Known Secondary structure  GG
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   131.. ......140...... ...150.........160.........170.........180
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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