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Job DescriptionP50148
Confidence97.40%DateThu Apr 26 09:30:17 BST 2012
Rank192Aligned Residues165
% Identity16%Templatec3p1jB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:gtpase imap family member 2; PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.........80.........90.........100.........110........
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Query Sequence  ELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDV
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Template Sequence  ELRIILVGKTGTGKSAAGNSIL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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S
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   22.......30.........40...
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  EKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RKTLTKTCSKSQGEIVIIDTPDM
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GG
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   44.....50.........60......
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL
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Template Sequence  FSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ. . . . . . . . . DQQAAQRVKEIFGEDAMG. . HTIVLFTHNGG
Template Known Secondary structure  GGSS


TT

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GGGGG..G

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   82.......90.........100.........110.........120. ........130......... 140.........150
 
   279280.........290.........300.........310.........320.........330.........340.........350..
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Query Sequence  LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN
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Template Sequence  SLMD. . . . . . . . . . . . . . . . . YMHDSDNKALSKLVAACGGR. . . . . . ICAFNNNQDDQVKELMDCIEDLLMEKN
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TT
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   155... .160.........170........ .180.........190.........200.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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