Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence98.07%DateThu Apr 26 09:30:17 BST 2012
Rank116Aligned Residues139
% Identity18%Templatec2q3fB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190........ .200.........210...... ...220.........230.........240.........250.........260
Predicted Secondary structure 






.






...









Query SS confidence 













.

















. . .











































Query Sequence  PTTGIIEYPFDLQS. VIFRMVDVGGQRSERRKW. . . IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT
Query Conservation   
 

 
  
    .      





  
 

...   
  
  




 


 

 
 

   


 


 

  
  
Alig confidence 













.

















...

















..........















Template Conservation   
                 
 
  
 
                   
   
   ..........                
Template Sequence  STNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEXIFRGTGALIFVIDSQD. . . . . . . . . . DYXEALARLHLTVTRA
Template Known Secondary structure 


S


SS




S


TT
TT

TTTS..........

Template Predicted Secondary structure 

















..........

Template SS confidence 















































































   77..80.........90.........100.........110.........120.........130 .........140......
 
   261........270.........280.........290.........300.........310.........320.........330.........340
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV
Query Conservation          


 


 


  

    
   



 
           
   
        
    
 
 
 

  
  
Alig confidence 





















...............



































.





Template Conservation          



 

 

    ...............            
             
    


 
. 

  
Template Sequence  YKVNTDINFEVFIHKVDGLSDD. . . . . . . . . . . . . . . HKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYD. HSIFEA
Template Known Secondary structure 
TT

TTSS
...............TT
TTS


TTS.S
Template Predicted Secondary structure 










...............





.

Template SS confidence 















































































   147..150.........160........ .170.........180.........190.........200.... .....210
 
   341........
Predicted Secondary structure 
Query SS confidence 








Query Sequence  FAAVKDTIL
Query Conservation     
   
 
Alig confidence 








Template Conservation 
  
    
Template Sequence  FSKVVQKLI
Template Known Secondary structure  TT
Template Predicted Secondary structure 
Template SS confidence 








   211........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions