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Job DescriptionP50148
Confidence98.17%DateThu Apr 26 09:30:17 BST 2012
Rank100Aligned Residues163
% Identity22%Templatec3izyP_
PDB info PDB header:rna, ribosomal proteinChain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2
Resolution10.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  PRSPVVTIMGHVDHGKTTLLDKL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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B
STTTT.........................................................
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   178.180.........190.........200
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RKTQVAAMEA. . . . . . . . . . GGITQHIGAFLVSL
Template Known Secondary structure  ..............................................SSS..........

B


TTS

B
S
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   201........210 .........220....
 
   197..200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  . QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK
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Template Sequence  PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD. . . . . . . . . . . GVMKQTVESIQHAKDA. . . . HVPIVLAINK
Template Known Secondary structure  S
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B

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TTTSBBSSSBSBSS

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   225....230.........240.........250.........260... ......270......... 280.........
 
   276...280.........290.........300.........310.........320.........330.........340.......
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Query Sequence  KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT
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Template Sequence  CDK. . . . . . . . . . . . . . . . . . . AEADPEKVKKELLAYDVVCED. YGGDVQAVHVSALTGENMMALAEATIAL
Template Known Secondary structure  GGG...................TTTS

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   290.. .......300.........310... ......320.........330.........340.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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