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Job DescriptionP50148
Confidence100.00%DateThu Apr 26 09:30:17 BST 2012
Rank3Aligned Residues320
% Identity52%Templatec1tndA_
PDB info PDB header:binding protein(gtp)Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV.
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Template Sequence  RTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMA
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STTSSS



TT


SSTTT
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   28.30.........40.........50.........60.........70.........80.........90.........100.......
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  DTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSF
Template Known Secondary structure  TTS
TT


STTGGGS


TTTTTSTT









S
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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK
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Template Sequence  KDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKK
Template Known Secondary structure  TT

SGGGGGG
TT
SGGGGG
B
SS
TTSBT
SGGGS

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   188.190.........200.........210.........220.........230.........240.........250.........260.......
 
   277..280.........290.........300.........310........ .320.........330.........340.........350.....
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Query Sequence  DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP. DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKE
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Template Sequence  DVFSEKIKKAHLSICFPDYNG. PNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD
Template Known Secondary structure  TTS
GGGT
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TT
TTBTTB


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   268.270.........280........ .290.........300.........310.........320.........330.........340......
 
   356..
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Query Sequence  YNL
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Template Sequence  CGL
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   347..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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