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Job DescriptionP50148
Confidence98.78%DateThu Apr 26 09:30:17 BST 2012
Rank39Aligned Residues174
% Identity21%Templatec2rexD_
PDB info PDB header:signaling protein/lipoproteinChain: D: PDB Molecule:rho-related gtp-binding protein rho6; PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
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Template Sequence  ARCKLVLVGDVQCGKTAMLQVL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   12.......20.........30...
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AKDCYPETYVPTVFENYTAC. . . . . . . . LETEEQ
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   34.....40.........50... ......
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD
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Template Sequence  RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR. . . . . . . . . . PETVALKKWRTEILDYCP. . . STRVLLIGCKTD
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SGGGTTTGGGGGTT
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GG
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   60.........70.........80.........90...... ...100.........110.... .....120......
 
   278.280.........290.........300.........310.........320.........330..... ....340.........
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Query Sequence  LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE. NIRFVFAAVKDTIL
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Template Sequence  LRTDLSTLMELSHQ. . . . KQAPISYEQGCAI. . . . . . . . AKQLGAEIYL. EGSAFTSEKSIHSIFRTASMLCL
Template Known Secondary structure  GGG
T....T




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   129130.........140.. .......150..... ....160..... ....170.........180........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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