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Job DescriptionP50148
Confidence98.15%DateThu Apr 26 09:30:17 BST 2012
Rank104Aligned Residues168
% Identity17%Templatec2plfA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  QPEVNIGVVGHVDHGKTTLVQAI. . TGIWT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SSTTSSSTT..SS
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   7..10.........20......... 30....
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SKHSEELKRGMTIKLGYAETNIGV
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TTTTTT


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   35....40.........50........
 
   197..200 .........210.........220.........230.........240.........250
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Query Sequence  QSVI. . . . . . . . . . . . . . . . . . . . . . . . . . FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEE
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Template Sequence  CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE. . . . . . . . . . PFPQPQ
Template Known Secondary structure 
TTS
TTTTSSS

GGGT

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   5960.........70.........80.........90.........100.........110.........120.. ......
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  SKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC
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Template Sequence  TREHFVALGI. . . IGVKNLIIVQNKVDV. . . . . . . . . . . . . . . . . . . . . VSKEEALSQYRQIKQFTKGTWAENVPIIPVS
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GGG.....................S
TTSTTSGGGG


B
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   129130........ .140.........150... ......160.........170.........180....
 
   331........340......
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Query Sequence  ATDTENIRFVFAAVKD
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Template Sequence  ALHKINIDSLIEGIEE
Template Known Secondary structure  TTTTBS
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   185....190.........200
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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