Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence96.14%DateThu Apr 26 09:30:17 BST 2012
Rank229Aligned Residues172
% Identity19%Templatec3mmpC_
PDB info PDB header:transferaseChain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  RQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHN
Query Conservation    
  

       





 







 





    

  
       
  

      

               
Alig confidence 
































...............................................
Template Conservation   
     
  

  

 











 
 
...............................................
Template Sequence  AEVAAMSKQSKPHVNVGTIGHVDHGKTTLTAAI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 



TTS
...............................................
Template Predicted Secondary structure 














...............................................
Template SS confidence 















































































   273......280.........290.........300.....
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  KAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPT
Query Conservation                      
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
Alig confidence  ...................................................












................
Template Conservation  ...................................................
       
 
  ................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTVLAKTYGGTSH. . . . . . . . . . . . . . . .
Template Known Secondary structure  ...................................................




................
Template Predicted Secondary structure  ...................................................


................
Template SS confidence 















































































   1032.......1040....
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  TGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN
Query Conservation   

 
  
          





  
 

   
  
  




 


 

 
 

   


 


 

  
        
Alig confidence  .....










































........













.......


Template Conservation  .....
 
 
      


 


 


  

 


 

 






  ........
   





 

 ....... 

Template Sequence  . . . . . VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD. . . . . . . . GPMPQTREHILLGR. . . . . . . QVG
Template Known Secondary structure  .....
SS



TS


STTT........


TT.......TT
Template Predicted Secondary structure  .....











........


.......

Template SS confidence 















































































   1067..1070.........1080.........1090.........1100......... 1110.........1120... ...
 
   267. .270.........280.........290.........300.........310.........320.........330.........340.....
Predicted Secondary structure 

.























Query SS confidence 

.












































































Query Sequence  SS. VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK
Query Conservation    .


 


 


  

    
   



 
           
   
        
    
 
 
 

  
  
   
 
Alig confidence 

.









.................

.














































Template Conservation 
  


 




 .................
 . 
   
 
   
   
         
  
  
   
           
Template Sequence  VPYIIVFLNKCDM. . . . . . . . . . . . . . . . . VD. DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKI
Template Known Secondary structure 
S

GGG.................

.
TTS
GGG



T
Template Predicted Secondary structure 




.................

.




















Template SS confidence 















































































   1127..1130......... 1140. ........1150.........1160.........1170.........1180........
 
   346...350
Predicted Secondary structure 
Query SS confidence 




Query Sequence  DTILQ
Query Conservation    
  
Alig confidence 




Template Conservation    
  
Template Sequence  LELAG
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 




   11891190...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions