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Job DescriptionP50148
Confidence97.66%DateThu Apr 26 09:30:17 BST 2012
Rank175Aligned Residues161
% Identity24%Templatec3bbpA_
PDB info PDB header:protein transport/splicingChain: A: PDB Molecule:ras-related protein rab-6a; PDBTitle: rab6-gtp:gcc185 rab binding domain complex
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKLVFLGEQSVGKTSLITRFM. . . YDSFD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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STTSS...TS


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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NTYQATIGIDFLSKTMYLEDRTVRLQLW. .
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S




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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  . . . . . DTAGLERFRSLIPSYIRDSTVAVVVYDITN. . . . . . . . . . . VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA
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SSGGGTTTT
STT
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GGG
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   68.70.........80.........90....... ..100.........110.........120.........130.
 
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI
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Template Sequence  DKR. . . . . . . . . . . . . . . . QVSIEEGERKAKEL. . . . . . . . . . NVMFIETSAKAGYNVKQLFRRVAAAL
Template Known Secondary structure  TT
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T..........T

BTTTTBTTT
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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