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Job DescriptionP50148
Confidence97.25%DateThu Apr 26 09:30:17 BST 2012
Rank200Aligned Residues112
% Identity22%Templatec3lx8A_
PDB info PDB header:metal transportChain: A: PDB Molecule:ferrous iron uptake transporter protein b; PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  TEIALIGNPNSGKTSLFNLIT. . . GHNQRVGNWP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  STTSS...TT

T..............................................
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   2.......10.........20.. .......30..
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GVTVERKSGLVKKNK
Template Known Secondary structure  .................................................................TSSS
SS
T
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   33......40.......
 
   200......... 210.........220.........230.........240.........250.........260.........270.
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Query Sequence  IFRMVDVGGQ. . . . . . . . RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL
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Template Sequence  DLEIQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATN. . . . . . . . . . . . . . . . . LERNLYLTTQLIETGIPVTI
Template Known Secondary structure  T



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SSSTT

SSTT.................TTSS
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   48.50.........60.........70.........80.........90 .........100.........110
 
   272.......280..
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Query Sequence  FLNKKDLLEEK
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Template Sequence  ALNMIDVLDGQ
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   111........120.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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