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Job DescriptionP50148
Confidence97.48%DateThu Apr 26 09:30:17 BST 2012
Rank184Aligned Residues158
% Identity23%Templatec4djtB_
PDB info PDB header:nuclear proteinChain: B: PDB Molecule:gtp-binding nuclear protein gsp1; PDBTitle: crystal structure of a nuclear gtp-binding protein from2 encephalitozoon cuniculi bound to gdp-mg2+
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  YKICLIGDGGVGKTTYINRVL. . . DGRFEK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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STTSS
B
T...T
GGG
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NYNATVGAVNHPVTFLDDQGNVIKF. . . .
Template Known Secondary structure  ...................................................TTTTBTTS
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  . . NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS. . . . . . . . . . . RITCQNLARWVKEFQAVVGNEAPIVVCANKID. .
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SGGGTS


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   60.........70.........80.........90.. .......100.........110.........120....
 
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . IKKKLVMEV. . . . . . . . . . LKGKNYEYFEISAKTAHNFGLPFLHLARIFTG
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BTTTTBTTTT
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   125....130... ......140.........150.........160.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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