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Job DescriptionP50148
Confidence98.61%DateThu Apr 26 09:30:17 BST 2012
Rank52Aligned Residues172
% Identity24%Templatec3degC_
PDB info PDB header:ribosomeChain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
ResolutionNULL Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  ARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVRE
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Template Sequence  MKNIRNFSIIAHIDHGKSTLSDR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   116...120.........130.........140.........150.........160.........170.........180 .........190..
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Query Sequence  VDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVL. . . RVRVPTTGIIEY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IIQICGGLSDREMEAQVLDSMDLERERGITIKAQSV
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   24.....30.........40.........50.........
 
   193.... ..200.........210.........220.........230.........240.........250.........260.......
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Query Sequence  PFDLQ. . . . . SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS
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Template Sequence  TLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE. . . . . . . . . . . AQTLANCYTAMEM. . . . DL
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   60.........70.........80.........90.........100......... 110.........120.. ..
 
   268.270.........280.........290.........300.........310.........320.........330.........340.......
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Query Sequence  SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT
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Template Sequence  EVVPVLNKIDL. . . . . . . . . . . . . . . . . . . PAADPERVAEEIEDIVGIDATD. . . . . . AVRCSAKTGVGVQDVLERLVRD
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   125....130..... ....140.........150....... ..160.........170.........
 
   348
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Query Sequence  I
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Template Sequence  I
Template Known Secondary structure  S
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   180
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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