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Job DescriptionP50148
Confidence99.02%DateThu Apr 26 09:30:17 BST 2012
Rank34Aligned Residues178
% Identity17%Templatec2qthA_
PDB info PDB header:nucleotide binding proteinChain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
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Query Sequence  RRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLK
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Template Sequence  KFYKRRI. NKLMKELESIKIIPSIGIVGYTNSGKTSLFNSLTG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   147..150... ......160.........170.........180........
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  IPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQD
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   179180.........190.........200.........210..... ....220.........230.........240.........250
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Query Sequence  VLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRK. . . . . . . . WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEE
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Template Sequence  . . . . . . . LMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTF. . . . . . . . . SENLLIE
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GGGGGGGSSTTS.........
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   202.......210.........220.........230.........240.........250........ .260.....
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  SKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC
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Template Sequence  TLQSSFEILREIGVSGKPILVTLNKIDK. . . . . . . . . . . . . . . . . . . INGDLYKKLDLVEKLSKELYSP. . . IFDVIPIS
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GGG...................

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   277..280.........290.........300.... .....310.........320...... ...330....
 
   331........340.........350..
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Query Sequence  ATDTENIRFVFAAVKDTILQLN
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Template Sequence  ALKRTNLELLRDKIYQLATQLS
Template Known Secondary structure  TTTTBS
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   335....340.........350......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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