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Job DescriptionP50148
Confidence99.21%DateThu Apr 26 09:30:17 BST 2012
Rank30Aligned Residues145
% Identity10%Templatec3l2oB_
PDB info PDB header:protein binding/cell cycleChain: B: PDB Molecule:f-box only protein 4; PDBTitle: structure-based mechanism of dimerization-dependent ubiquitination by2 the scffbx4 ubiquitin ligase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   172.......180.. .......190.........200 .........210.........220.........230.........240.
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Query Sequence  YLPTQQDVLRV. . . . . . RVPTTGIIEYPFDLQSVI. . . . FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE
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Template Sequence  SLMSSEELCPTAGLPQRQIDGIGSGVN. FQLNNQHKFNILILYSTTRRYSVIPQIQKVCEVVDGFIYVANAEAHKRH. . .
Template Known Secondary structure  TT
GGG



STTT
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B
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   196...200.........210.........220.. .......230.........240.........250.........260.........270.
 
   242.......250.........260.........270.... .....280.........290.........300.........310.........320
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Query Sequence  SDNENRMEESKALFRTIITYPWFQNSSVILFLN. KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS
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Template Sequence  . . . . EWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD. . . . . . . . . . . . . . . . . . VKRMPCFYLA. . . . . HELHLNLL.
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TT

SSTT..................S
B

.....TTGGGG.
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   302.......310.........320.........330..... ....340..... ....350...
 
   321........330.........340........
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Query Sequence  DKIIYSHFTCATDTENIRFVFAAVKDTI
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Template Sequence  NHPWLVQDTEAETLTGFLNGIEWILEEV
Template Known Secondary structure 
S
TTT
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   354.....360.........370.........380.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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