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Job DescriptionP50148
Confidence97.32%DateThu Apr 26 09:30:17 BST 2012
Rank196Aligned Residues163
% Identity20%Templatec3cphA_
PDB info PDB header:protein transportChain: A: PDB Molecule:ras-related protein sec4; PDBTitle: crystal structure of sec4 in complex with rab-gdi
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  MKILLIGDSGVGKSCLLVRFV. . . EDKF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   21........30.........40. ....
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NPSFITTIGIDFKIKTVDINGKKVKLQLW. .
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SSS


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   46...50.........60.........70....
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  . . . . . DTAGQERFRTITTAYYRGAMGIILVYDVTD. . . . . . . . . . . ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM.
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TTGGGGT


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STT
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   75....80.........90.........100.... .....110.........120.........130.......
 
   280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  . . . . . . . . . . . . . . . . ETRVVTADQGEALAKELGIP. . . . . . . . . . FIESSAKNDDNVNEIFFTLAKLIQEK
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BTTTTBSS
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   138.140.........150....... ..160.........170.........180...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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