Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence100.00%DateThu Apr 26 09:30:17 BST 2012
Rank5Aligned Residues312
% Identity47%Templatec3cx6A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:guanine nucleotide-binding protein alpha-13 PDBTitle: crystal structure of pdzrhogef rgrgs domain in a complex2 with galpha-13 bound to gdp
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  RELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD
Query Conservation     





 







 





    

  
       
  

      

                          
Alig confidence 















































































Template Conservation    






  






 

 


     
  
       
  

      

                          
Template Sequence  RLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFD
Template Known Secondary structure 


STTSSTS



TTTT


S
GGGTS
Template Predicted Secondary structure 






















Template SS confidence 















































































   47..50.........60.........70.........80.........90.........100.........110.........120......
 
   118.120 .........130.........140.........150.........160.........170.........180.........
Predicted Secondary structure 


........































Query SS confidence 


. . . . . . . .




































































Query Sequence  VEK. . . . . . . . VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGI
Query Conservation     ........      
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
 

Alig confidence 


........




































































Template Conservation                   
    
  

 
  

          
 

  


  
 

    
 

  


  
  
 

Template Sequence  TRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGI
Template Known Secondary structure  TTSTT



TGGGS


TTTSTT









S
Template Predicted Secondary structure 







































Template SS confidence 















































































   127..130.........140.........150.........160.........170.........180.........190.........200......
 
   190.........200.........210.........220.........230.........240.........250.........260.........
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  IEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV
Query Conservation   
  
          





  
 

   
  
  




 


 

 
 

   


 


 

  
          
Alig confidence 















































































Template Conservation      
          




   
 

   
     




 


 
    
    


 


  
  
          
Template Sequence  HEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI
Template Known Secondary structure  TT


STTTGGGGGGG
TT

TTGGG
B
SSSTTSBT
GGGTTS
Template Predicted Secondary structure 



























Template SS confidence 















































































   207..210.........220.........230.........240.........250.........260.........270.........280......
 
   270.........280.........290.........300.........310.........320.........330.........340.........
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL
Query Conservation 

 


 


  

    
   



 
           
   
        
    
 
 
 

  
  
   
   
 
Alig confidence 
















































..




























Template Conservation 

  

 
 
  

    
   

 
 
           
   
     .. 
      
 
 
   
   
  
   
 
Template Sequence  ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR. . DRPLYHHFTTAINTENIRLVFRDVKDTIL
Template Known Secondary structure 
TTT

GGGT
TT

S
TT
TT

..





TT
Template Predicted Secondary structure 



















..



Template SS confidence 















































































   287..290.........300.........310.........320.........330..... ....340.........350.........360....
 
   350.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  QL
Query Conservation    
Alig confidence 

Template Conservation    
Template Sequence  HD
Template Known Secondary structure  T
Template Predicted Secondary structure 

Template SS confidence 

   368.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions