Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence98.18%DateThu Apr 26 09:30:17 BST 2012
Rank99Aligned Residues166
% Identity21%Templatec3cbqA_
PDB info PDB header:nucleotide binding proteinChain: A: PDB Molecule:gtp-binding protein rem 2; PDBTitle: crystal structure of the human rem2 gtpase with bound gdp
Resolution1.82 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
Query Conservation   





 







 





    

  
       
  

      

                            
Alig confidence 




















...



....................................................
Template Conservation   

 


   






    ...   
....................................................
Template Sequence  FKVMLVGESGVGKSTLAGTFG. . . GLQG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
STTSST
...

....................................................
Template Predicted Secondary structure 





...



....................................................
Template SS confidence 















































































   115....120.........130..... ....
 
   120.........130.........140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
Query Conservation         
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
 

 
  
     
Alig confidence  .................................................


























....
Template Conservation  .................................................                           ....
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DSAHEPENPEDTYERRIMVDKEEVTLV. . . .
Template Known Secondary structure  .................................................
GGGTTTS
TTTT....
Template Predicted Secondary structure  .................................................













....
Template SS confidence 















































































   140.........150.........160......
 
   200.........210.........220.........230.........240.........250.........260.........270.........
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
Query Conservation       





  
 

   
  
  




 


 

 
 

   


 


 

  
          


 


 


Alig confidence  ..
































..........


































Template Conservation  ..                                 ..........                              
 
  
Template Sequence  . . VYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD. . . . . . . . . . RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA
Template Known Secondary structure  ..




SGGG
STT
..........TSTTS



TT
T
Template Predicted Secondary structure  ..


















..........



















Template SS confidence 















































































   167..170.........180.........190......... 200.........210.........220.........230....
 
   280.........290.........300.........310.........320.........330.........340.........350.
Predicted Secondary structure 






















Query SS confidence 







































































Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
Query Conservation    

    
   



 
           
   
        
    
 
 
 

  
  
   
   
   
Alig confidence 


................













..........




























Template Conservation     ................              ..........     
 

  
  
 
 
  
   
   
Template Sequence  RSR. . . . . . . . . . . . . . . . EVSLEEGRHLAGTL. . . . . . . . . . SCKHIETSAALHHNTRELFEGAVRQIRLR
Template Known Secondary structure  TT
................
S
T..........T
BTTTTBSTT
Template Predicted Secondary structure 
................



..........








Template SS confidence 







































































   235.. ..240.........250. ........260.........270.........280
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions