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Job DescriptionP50148
Confidence97.97%DateThu Apr 26 09:30:17 BST 2012
Rank135Aligned Residues152
% Identity30%Templatec2o52B_
PDB info PDB header:protein transportChain: B: PDB Molecule:ras-related protein rab-4b; PDBTitle: crystal structure of human rab4b in complex with gdp
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKFLVIGSAGTGKSCLLHQFI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTTSS...........................................................
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   910.........20.........
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EVEFGSRVVNVGGKTVKLQI. . . .
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   30.........40.........
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  . . . . WDTAGQERFRSVTRSYYRGAAGALLVYDITS. . . . . . . . . . . RETYNSLAAWLTDARTLASPNIVVILCGNKKDLD
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TTGGGTS


TT
STT
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TT

GGGG
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   62.......70.........80.........90.. .......100.........110.........120......
 
   280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  PER. . . . . . . . . . . . . . . . EVTFLEASRFAQE. . . . . . . . . . NELMFLETSALTGENVEEAFLKCARTILNK
Template Known Secondary structure  GG
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S
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TTT
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   127.. 130.........140.. .......150.........160.........170..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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