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Job DescriptionP50148
Confidence98.25%DateThu Apr 26 09:30:17 BST 2012
Rank90Aligned Residues154
% Identity21%Templatec3cpjB_
PDB info PDB header:protein transportChain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  FKIVLIGDSGVGKSNLLSRF. . . TKNEFN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MGVEFATRTLEIEGKRI
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STT
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Query Sequence  IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL
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Template Sequence  KAQIWDTAGQERYRAITSAYYRGAVGALIVYDSKS. . . . . . . . . . . . . . SSYENCNHWLSELRENADVAVGLIGNKSDLA
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TTTTTTT


GGGTTT




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GGGG
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   63......70.........80.........90....... ..100.........110.........120........
 
   280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  HLR. . . . . . . . . . . . . . . . AVPTEESKTFAQEN. . . . . . . . . . QLLFTETSAL. SENVDKAFEELINTIYQK
Template Known Secondary structure  GG
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   132.. .....140........ .150........ .160.........170......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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