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Job DescriptionP50148
Confidence97.64%DateThu Apr 26 09:30:17 BST 2012
Rank178Aligned Residues158
% Identity21%Templatec2p5sB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:ras and ef-hand domain containing; PDBTitle: rab domain of human rasef in complex with gdp
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVE
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Template Sequence  YKIVLAGDAAVGKSSFLMRLCK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTTSS..........................................................
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   542.......550.........560...
 
   120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ. .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NEFRGVDFQMKTLIVDGE
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   564.....570.........580.
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD
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Template Sequence  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC. . . . . . . . . . . . . . EKSFLNIREWVDMIEDAAVPIMLVGNKAD
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STT
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GG
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   589590.........600.........610.........620..... ....630.........640.........650....
 
   278.280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL
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Template Sequence  IRDTAATEGQK. . . . . . . . . . CVPGHFGEKLAMTY. . . . . . . . . . GALFCETSAKDGSNIVEAVLHLAREVKKR
Template Known Secondary structure  GTT

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   658.660........ .670.........680.. .......690.........700.........710.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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