Return to main results Retrieve Phyre Job Id

Job DescriptionP50148
Confidence97.87%DateThu Apr 26 09:30:17 BST 2012
Rank148Aligned Residues144
% Identity22%Templatec3qq5A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
Resolution2.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60.........70.........80.........90.........100.........110....
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVR
Query Conservation        





 







 





    

  
       
  

      

                       
Alig confidence 
























.......................................................
Template Conservation 
 
 
  
 


  










.......................................................
Template Sequence  RLGFRRYIVVAGRRNVGKSSFMNAL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 





S
STTTTTTTTSS.......................................................
Template Predicted Secondary structure 









.......................................................
Template SS confidence 















































































   2.......10.........20......
 
   115....120.........130.........140.........150.........160.........170.........180.........190....
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  EVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPF
Query Conservation              
    
  

 
  

    
  
  
 
   


  
 

    
 

  


  
  
 

 
  
Alig confidence  ......................................................................









Template Conservation  ......................................................................



   
 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGTDPVYKSM
Template Known Secondary structure  ......................................................................





Template Predicted Secondary structure  ......................................................................


Template SS confidence 















































































   30.........
 
   195.... 200.........210...... ...220.........230.........240.........250.........260......
Predicted Secondary structure 


.





.......












Query SS confidence 




.
















. . . . . . .

















































Query Sequence  DLQSV. IFRMVDVGGQRSERRKW. . . . . . . IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN
Query Conservation       .     





  
 

.......   
  
  




 


 

 
 

   


 


 

  
        
Alig confidence 




.
















.......

















.................














Template Conservation 

     
 





  
   
      

   
   



 
 
   .................     


  

   
Template Sequence  ELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP. . . . . . . . . . . . . . . . . TPYEDDVVNLFKEME
Template Known Secondary structure  TTT
SSTT


TT



TS
S
SSS
.................
TT
Template Predicted Secondary structure 



















.................


Template SS confidence 















































































   53......60.........70.........80.........90.........100 .........110.....
 
   267..270.........280.........290.........300.........310.........320.........330.........340......
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD
Query Conservation    


 


 


  

    
   



 
           
   
        
    
 
 
 

  
  
   
  
Alig confidence 
















............................


































Template Conservation 








 

     ............................
             

 





 




 
 
  
Template Sequence  IPFVVVVNKIDVLGEKA. . . . . . . . . . . . . . . . . . . . . . . . . . . . EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE
Template Known Secondary structure 





TTTT


............................TSS

TT





SS

TTSTTT
Template Predicted Secondary structure 









............................









Template SS confidence 















































































   116...120.........130.. .......140.........150.........160.......
 
   347.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  TI
Query Conservation   
Alig confidence 

Template Conservation   
Template Sequence  IL
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 

   168.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions