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Job DescriptionP50148
Confidence97.89%DateThu Apr 26 09:30:17 BST 2012
Rank145Aligned Residues175
% Identity25%Templatec2hxsA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:ras-related protein rab-28; PDBTitle: crystal structure of rab28a gtpase in the inactive (gdp-3'p-2 bound) form
Resolution1.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV
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Template Sequence  MRQLKIVVLGDGASGKTSLTTCFAQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   10.........20.........30....
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ETFGKQYKQTIGLDFFLRRITLPGNLN. . . .
Template Known Secondary structure  .................................................GGTTTTTSSTTT....
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   35....40.........50.........60.
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK
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Template Conservation  ..                                      ........                                
Template Sequence  . . VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ. . . . . . . . SFENLEDWYTVVKKVSEESETQPLVALVGNKI
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G
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   62.......70.........80.........90......... 100.........110.........120.........130.
 
   277..280.........290.........300.........310.........320.........330.........340.........350.....
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Query Sequence  DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKE
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Template Sequence  DLEHMR. . . . . . . . . . . . . . . . TIKPEKHLRFCQEN. . . . . . . . . . GFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK
Template Known Secondary structure  GGGGG
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   132..... ..140.........150. ........160.........170.........180....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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