Job Description P52594 Confidence 24.37% Date Thu Apr 26 09:46:29 BST 2012 Rank 106 Aligned Residues 108 % Identity 26% Template d1gff1_ SCOP info Nucleoplasmin-like/VP (viral coat and capsid proteins) ssDNA viruses Microviridae-like VP Resolution 3.00

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		28	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.					.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure											.											.	.	.	.				.	.	.	.	.																						.	.	.	.	.																		.	.	.	.	.
Query SS confidence											.											.	.	.	.				.	.	.	.	.																						.	.	.	.	.																		.	.	.	.	.
Query Sequence		K	C	F	D	C	D	Q	R	G	.	P	T	Y	V	N	M	T	V	G	S	.	.	.	.	F	V	C	.	.	.	.	.	T	S	C	S	G	S	L	R	G	L	N	P	P	H	R	V	K	S	I	S	M	.	.	.	.	.	T	T	F	T	Q	Q	E	I	E	F	L	Q	K	H	G	N	E	.	.	.	.	.
Query Conservation											.											.	.	.	.				.	.	.	.	.																						.	.	.	.	.																		.	.	.	.	.
Alig confidence											.											.	.	.	.				.	.	.	.	.																						.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		L	V	F	E	A	G	K	I	G	R	L	K	T	I	S	W	T	P	V	V	A	G	D	S	F	E	C	D	M	V	G	A	I	R	L	S	P	L	R	R	G	L	A	V	D	S	R	V	D	I	F	S	F	Y	I	P	H	R	H	I	Y	G	Q	Q	W	I	N	F	M	K	D	G	V	N	A	S	P	L	P	P
Template Known Secondary structure									S	S	B											T	T																B	S	S	S			S													S					T										G	G	G
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
			88	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.							.	.	.	.	.
Query SS confidence		.							.	.	.	.	.
Query Sequence		.	V	C	K	Q	I	W	.	.	.	.	.	L	G	L	F	D	D	R	S	S	A	I	P	D	F	R	D	P	Q	K	V	K	E	F	L	Q	E	K	Y	E	K	K	R	W	Y	V	P	P	E	Q	A	K	V	V	A
Query Conservation		.							.	.	.	.	.
Alig confidence		.							.	.	.	.	.																						.	.
Template Conservation																																			.	.
Template Sequence		V	T	C	S	S	G	W	D	S	A	A	Y	L	G	T	I	P	S	S	T	L	K	V	P	K	F	L	H	Q	G	Y	L	N	.	.	I	Y	N	N	Y	F	K	P	P	W	S	D	D	L	T	Y	A	N	P	S	N
Template Known Secondary structure						S	S	T	T	S	S	G	G	G	S	S				T	T	S													.	.						T	S		T	T	S						S	S	G	G	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions