Job Description P52594 Confidence 100.00% Date Thu Apr 26 09:46:29 BST 2012 Rank 3 Aligned Residues 122 % Identity 25% Template c2iqjB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		E	K	H	L	K	M	L	R	D	M	T	G	L	P	H	N	R	K	C	F	D	C	D	Q	R	G	P	T	Y	V	N	M	T	V	G	S	F	V	C	T	S	C	S	G	S	L	R	G	L	N	P	P	.	H	R	V	K	S	I	S	M	T	T	F	T	Q	Q	E	I	E	F	L	Q	K	H	G	N	E	V	C
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		D	R	Y	Q	A	V	L	A	N	L	L	L	E	E	D	N	K	F	C	A	D	C	Q	S	K	G	P	R	W	A	S	W	N	I	G	V	F	I	C	I	R	C	A	G	I	H	R	N	L	G	V	H	I	S	R	V	K	S	V	N	L	D	Q	W	T	Q	E	Q	I	Q	C	M	Q	E	M	G	N	G	K	A
Template Known Secondary structure				S								T	T	S	G	G	G	G	B		T	T	T			B	S						T	T	T	T													T	T		T	T	T						T	T	T	S												T	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	I	W	L	G	L	F	D	D	R	S	S	A	I	P	D	F	R	D	P	Q	K	V	K	E	F	L	Q	E	K	Y	E	K	K	R	W	Y	V	P	P	E	Q	A	K	V
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		N	R	L	Y	E	A	Y	L	P	E	T	F	R	R	.	.	.	P	Q	I	D	P	A	V	E	G	F	I	R	D	K	Y	E	K	K	K	Y	M	D	R	S	L	D	I	N	A
Template Known Secondary structure						T	T	T			T	T				.	.	.			S													T	S		T	T			G	G	G		T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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