Job Description Q9H3Y6 Confidence 99.72% Date Sat Jun 16 10:17:08 BST 2012 Rank 375 Aligned Residues 81 % Identity 22% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.																.	.	.	.	.	.
Query SS confidence																																															.																.	.	.	.	.	.
Query Sequence		D	Q	P	W	Y	F	S	G	V	S	R	T	Q	A	Q	Q	L	L	L	S	P	P	N	E	P	G	A	F	L	I	R	P	S	E	S	S	L	G	G	Y	S	L	S	V	R	.	A	Q	A	K	V	C	H	Y	R	V	S	M	A	A	D	.	.	.	.	.	.	G	S	L	Y	L	Q	K	G	R	L	F	P	G
Query Conservation																																															.																.	.	.	.	.	.
Alig confidence								.													.	.																									.																.	.	.	.	.	.
Template Conservation								.													.	.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	.	.	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D
Template Known Secondary structure				T	T			.												T	.	.	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure								.													.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	L	L	T	Y	Y	K	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	Q	I	I	V	E	Y	L	Q	N
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions