Job Description Q9H3Y6 Confidence 99.83% Date Sat Jun 16 10:17:08 BST 2012 Rank 363 Aligned Residues 86 % Identity 22% Template c3gxxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b Resolution 2.40 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																															.												.	.
Query SS confidence																																															.												.	.
Query Sequence		Q	P	W	Y	F	S	G	V	S	R	T	Q	A	Q	Q	L	L	L	S	P	P	N	E	P	G	A	F	L	I	R	P	S	E	S	S	L	G	G	Y	S	L	S	V	R	A	.	Q	A	K	V	C	H	Y	R	V	S	M	.	.	A	A	D	G	S	L	Y	L	Q	K	G	R	L	F	P	G	L	E	E	L	L
Query Conservation																																															.												.	.
Alig confidence							.													.	.																										.												.	.
Template Conservation							.													.	.
Template Sequence		H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	.	.	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	X	E	K	E	X	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I
Template Known Secondary structure			T	T	B		.												T	.	.	T	S		T	T									S	T	T											T	T																				S	S	S				S	S
Template Predicted Secondary structure							.													.	.
Template SS confidence
		10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	Y	K	A	N	W	K	L	I	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	Y	L	Q	N	K	I	R	L	L	N
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions