Job Description Q9H3Y6 Confidence 100.00% Date Sat Jun 16 10:17:08 BST 2012 Rank 129 Aligned Residues 236 % Identity 31% Template c2h6dA_ PDB info PDB header:signaling protein,transferase Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain) Resolution 1.85 Å

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		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.															.	.	.	.
Query SS confidence																												.															.	.	.	.
Query Sequence		E	R	P	H	S	E	F	A	L	G	R	K	L	G	E	G	Y	F	G	E	V	W	E	G	L	W	.	L	G	S	L	P	V	A	I	K	V	I	K	S	A	.	.	.	.	N	M	K	L	T	D	L	A	K	E	I	Q	T	L	K	G	L	R	H	E	R	L	I	R	L	H	A	V	C	S	G	G	E	P	V
Query Conservation																												.															.	.	.	.
Alig confidence																												.															.	.	.	.
Template Conservation
Template Sequence		R	V	K	I	G	H	Y	V	L	G	D	T	L	G	V	G	T	F	G	K	V	K	I	G	E	H	Q	L	T	G	H	K	V	A	V	K	I	L	N	R	Q	K	I	R	S	L	D	V	V	G	K	I	K	R	E	I	Q	N	L	K	L	F	R	H	P	H	I	I	K	L	Y	Q	V	I	S	T	P	T	D	F
Template Known Secondary structure						T	T											S	S									T	T	T																	T	T														T				T	T	B										S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	V	T	E	L	M	R	K	G	N	L	Q	A	F	L	G	T	P	E	G	R	A	L	R	L	P	P	L	L	G	F	A	C	Q	V	A	E	G	M	S	Y	L	E	E	Q	R	V	V	H	R	D	L	A	A	R	N	V	L	V	D	D	G	L	A	C	K	V	A	D	F	G	L	A	R	L	L	K	D	D
Query Conservation
Alig confidence																						.	.																																																									.	.
Template Conservation																						.	.																																																									.	.
Template Sequence		F	M	V	M	E	Y	V	S	G	G	E	L	F	D	Y	I	C	K	H	G	.	.	R	V	E	E	M	E	A	R	R	L	F	Q	Q	I	L	S	A	V	D	Y	C	H	R	H	M	V	V	H	R	D	L	K	P	E	N	V	L	L	D	A	H	M	N	A	K	I	A	D	F	G	L	S	N	M	M	S	.	.
Template Known Secondary structure										S		B										.	.	S																									S	S						G	G	G					T	T	S									G	G	G				.	.
Template Predicted Secondary structure																						.	.																																																									.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		I	Y	S	P	S	S	S	S	K	I	P	V	K	W	T	A	P	E	A	A	N	Y	R	V	.	F	S	Q	K	S	D	V	W	S	F	G	V	L	L	H	E	V	F	T	Y	G	Q	C	P	Y	E	G	M	T	N	H	E	T	L	Q	Q	I	M	R	G	Y	R	L	P	R	P	A	A	C	P	A	E	V	Y	V
Query Conservation																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.												.																				.																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	P	E	V	I	S	G	R	L	Y	A	G	P	E	V	D	I	W	S	C	G	V	I	L	Y	A	L	L	C	.	G	T	L	P	F	D	D	E	H	V	P	T	L	F	K	K	I	R	G	G	V	.	F	Y	I	P	E	Y	L	N	R	S	V	A	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.				T	G	G	G	T	T	S																						.	S	S		S	S			S	S													.					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																.																						.
Template SS confidence
															166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	L	E	C	W	R	S	S	P	E	E	R	P	S	F	A	T	L	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M	H	M	L	Q	V	D	P	L	K	R	A	T	I	K	D	I	R	E
Template Known Secondary structure							T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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