19/06/2012 12:40:30 : INFO  : Run start: Tue Jun 19 12:40:30 BST 2012
19/06/2012 12:40:30 : INFO  : Initialised job
19/06/2012 12:40:30 : INFO  : Initialised job:
Sequence
>batch____
MEPFLRRRLAFLSFFWDKIWPAGGEPDHGTPGSLDPNTDPVPTLPAEPCSPFPQLFLALY
DFTARCGGELSVRRGDRLCALEEGGGYIFARRLSGQPSAGLVPITHVAKASPETLSDQPW
YFSGVSRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRVSMAADGSLY
LQKGRLFPGLEELLTYYKANWKLIQNPLLQPCMPQKAPRQDVWERPHSEFALGRKLGEGY
FGEVWEGLWLGSLPVAIKVIKSANMKLTDLAKEIQTLKGLRHERLIRLHAVCSGGEPVYI
VTELMRKGNLQAFLGTPEGRALRLPPLLGFACQVAEGMSYLEEQRVVHRDLAARNVLVDD
GLACKVADFGLARLLKDDIYSPSSSSKIPVKWTAPEAANYRVFSQKSDVWSFGVLLHEVF
TYGQCPYEGMTNHETLQQIMRGYRLPRPAACPAEVYVLMLECWRSSPEERPSFATLREKL
HAIHRCHP

19/06/2012 12:40:30 : INFO  : Checked sequence
19/06/2012 12:40:31 : INFO  : Finding homologues with PSI-BLAST
19/06/2012 12:40:31 : INFO  : PSI-BLAST 3 iterations
19/06/2012 12:45:48 : INFO  : PSI-BLAST 5 iterations
19/06/2012 12:53:55 : INFO  : Finished PSI-BLAST
19/06/2012 12:53:55 : INFO  : Running Buildali to generate a3m file
19/06/2012 15:33:34 : INFO  : Converting to HMM
19/06/2012 15:34:01 : INFO  : Calibrating HMM
19/06/2012 15:34:11 : INFO  : Searching HMM database
19/06/2012 15:42:36 : INFO  : Finished buildali
19/06/2012 15:42:36 : INFO  : Predicting secondary structure
19/06/2012 15:42:36 : INFO  : Predicted secondary structure (PSI-Pred)
19/06/2012 15:42:36 : INFO  : Predicting Disordered regions
19/06/2012 15:42:37 : INFO  : Predicted Disorder (Disopred)
19/06/2012 15:42:37 : INFO  : Running memsat_svm check
19/06/2012 15:43:03 : INFO  : Running memsat_svm full
19/06/2012 15:44:28 : INFO  : Predicted Transmembrane (memsat_svm) ID 'ac5dc16da2fb3c8d'
19/06/2012 15:44:28 : INFO  : Initialising fold library search
19/06/2012 15:44:28 : INFO  : Initialised search input
19/06/2012 15:44:28 : INFO  : Building Ensemble models
19/06/2012 15:44:28 : INFO  : Building hh.c2fo0A_.model.1.pdb
19/06/2012 15:44:29 : INFO  : Building hh.c1y57A_.model.2.pdb
19/06/2012 15:44:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/hh.c1y57A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/c1y57A_.2.pdb
19/06/2012 15:44:29 : INFO  : Building hh.c1oplA_.model.3.pdb
19/06/2012 15:44:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/hh.c1oplA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/c1oplA_.3.pdb
19/06/2012 15:44:30 : INFO  : Building hh.c2h8hA_.model.4.pdb
19/06/2012 15:44:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/hh.c2h8hA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/c2h8hA_.4.pdb
19/06/2012 15:44:30 : INFO  : Building hh.c1k9aB_.model.5.pdb
19/06/2012 15:44:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/hh.c1k9aB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/c1k9aB_.5.pdb
19/06/2012 15:44:31 : INFO  : Building hh.c2c0iA_.model.6.pdb
19/06/2012 15:44:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/hh.c2c0iA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ac5dc16da2fb3c8d/c2c0iA_.6.pdb
19/06/2012 15:44:31 : INFO  : Building c2fo0A_.1.pdb
19/06/2012 15:44:32 : INFO  : Building c1y57A_.2.pdb
19/06/2012 15:44:32 : INFO  : Building c1oplA_.3.pdb
19/06/2012 15:44:33 : INFO  : Building c2h8hA_.4.pdb
19/06/2012 15:44:34 : INFO  : Building c1k9aB_.5.pdb
19/06/2012 15:44:34 : INFO  : Building c2c0iA_.6.pdb
19/06/2012 15:44:35 : INFO  : Building c2ozoA_.7.pdb
19/06/2012 15:44:36 : INFO  : Building c3cblA_.8.pdb
19/06/2012 15:44:36 : INFO  : Building c2j0kB_.9.pdb
19/06/2012 15:44:37 : INFO  : Building d1qcfa3.10.pdb
19/06/2012 15:44:37 : INFO  : Building d1opja_.11.pdb
19/06/2012 15:44:37 : INFO  : Building d1qpca_.12.pdb
19/06/2012 15:44:38 : INFO  : Building c3zzwA_.13.pdb
19/06/2012 15:44:38 : INFO  : Building d1k2pa_.14.pdb
19/06/2012 15:44:38 : INFO  : Building c1lufA_.15.pdb
19/06/2012 15:44:39 : INFO  : Building d1lufa_.16.pdb
19/06/2012 15:44:39 : INFO  : Building d1u59a_.17.pdb
19/06/2012 15:44:40 : INFO  : Building c2ivsA_.18.pdb
19/06/2012 15:44:40 : INFO  : Building c3g0eA_.19.pdb
19/06/2012 15:44:41 : INFO  : Building c3pfqA_.20.pdb
19/06/2012 15:44:56 : INFO  : Finished HH model building
19/06/2012 15:44:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/06/2012 15:45:06 : INFO  : html domain output complete ID 'ac5dc16da2fb3c8d'
19/06/2012 17:05:29 : INFO  : Run end  : Tue Jun 19 17:05:29 BST 2012
