Job Description A0AVF1 Confidence 99.94% Date Sat Jun 16 10:27:57 BST 2012 Rank 19 Aligned Residues 299 % Identity 10% Template d1dcea1 SCOP info alpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase Resolution 2.00

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.											.	.	.	.	.	.	.
Predicted Secondary structure																															.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	G	V	Q	H	T	D	K	R	K	K	K	G	R	K	I	P	K	L	E	E	L	L	S	K	R	D	F	.	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	.	.	.	.	.	.	.	.	.	.	Y	K	R	A	L	E	E
Query Conservation																															.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																															.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	R	L	E	R	E	Q	K	L	K	L	Y	Q	S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	D	F	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F
Template Known Secondary structure			S																								T	T			S															T	T																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M	.	.	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L
Query Conservation																													.	.
Alig confidence																													.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	S	C	L	R	V	N	P	K	S	Y	G	T	W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	A	D	E	R	N	F	H	C	W	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Template Known Secondary structure										T	T														T		S	S																		T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.																											.
		158	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	S	I	H	Y	M	R	S	H	Y	.	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R
Query Conservation												.
Alig confidence												.																																																						.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		R	F	V	A	A	Q	A	A	V	A	P	A	E	E	L	A	F	T	D	S	L	I	T	R	N	F	S	N	Y	S	S	W	H	Y	R	S	C	L	L	P	Q	L	H	P	Q	P	D	S	G	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	.	.	.	.	L	V	Q	N	A	F	F	T	D	P	N	D
Template Known Secondary structure								T													T	T	T	T	T	T																		S					S	S	S			S	S											.	.	.	.										S	S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	.	.	E	F	A	K	E	L	I	R	H	N	L	V	V	F	R	G	G	E	G	A	L	Q	V	L	P	P	L	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	L	E	P	T
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		Q	S	A	W	F	Y	H	R	W	L	L	G	R	A	E	P	L	F	R	C	E	L	S	V	E	K	S	T	V	L	Q	S	E	L	E	S	C	K	E	L	Q	E	L	E	P	E	N	K	W	C	L	L	T	I	I	L	L	M	R	A	L	D	P	L	L	Y	E	K	E	T	L	Q	Y	F	S	T	L	K	A	V
Template Known Secondary structure		S											S							S																										T	T																	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H	M	K	I	A	Q
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		D	P	M	R	.	.	.	.	A	A	Y	L	D	D	L	R	S	K	F	L	L	E	N	S	V	L	K	M	E
Template Known Secondary structure			G	G	G	.	.	.	.
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		415	.	.	.					.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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